View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_2 (Length: 569)
Name: NF1871_low_2
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 553
Target Start/End: Complemental strand, 20456391 - 20455833
Alignment:
| Q |
12 |
agagacaaatcagtcattatgcacaactttaacaaaattgctcctgcttgttgcttcaacttgtgatataatgagattaata---atacgcttcattttg |
108 |
Q |
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| T |
20456391 |
agagacaaatcagtcattatgcacaactttaacaaaattgctcctgcttgttgcttcaacctgtgatataatgagattaatactaatacgcttcattttg |
20456292 |
T |
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| Q |
109 |
agcattccgaataactagtaattnnnnnnnnnt---tattggccaacctatcgtgcaaagtaatctccaaacaaagctttatgaattattgggtaaccta |
205 |
Q |
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| T |
20456291 |
agcattccgaataactagtaataaaaaaaaaaaaaatattgggcaacctatcgtgcaaagtaatctccaaacaaagctttatgaattattgggtaaccta |
20456192 |
T |
|
| Q |
206 |
tctcaataaattcactttctgatgataagtttgagaatagagtcaaattagacttaccaaatccaagtcacaaggaaaaccctttctttgattttgttg- |
304 |
Q |
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| T |
20456191 |
tctcaataaattcactttctgatgataagtttgagaatagagtcaaattagacttaccaaatctatgtcacgaggaaaaccatttctttgattttgttga |
20456092 |
T |
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| Q |
305 |
-------attattacctgaactctttgccttcnnnnnnnnnnnncacttgtattgtggaacctagctacccatgaattttaggtcattcctcccaaccca |
397 |
Q |
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| T |
20456091 |
ttctaatattattaccggaactctttgccttcaaaaacaaaaaacacttgtattgtggaacctagctacccatgaattttaggtcattcctcccaacctt |
20455992 |
T |
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| Q |
398 |
gtcgagtatgtaccagcttattgagaggcttcaactttatttcatggatttggttatgaccatattcaagatgacattaca---gttattacgtatgtac |
494 |
Q |
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| T |
20455991 |
gccgagtatgtatcagcttatcgagaggctttaaatttagttcatggatttgattatgaccatattcaagatgacattacaattattattatgcatgtac |
20455892 |
T |
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| Q |
495 |
atttttgtcaaataaatggtcgaggtcttctacttcttaatgtgtgacaggaagatgtg |
553 |
Q |
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| T |
20455891 |
atttttgtcaaataaatggtcgaggtcttctacttctcaatgtgtgacacgaagatgtg |
20455833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 219 - 553
Target Start/End: Original strand, 20425939 - 20426281
Alignment:
| Q |
219 |
actttctgatgataagtttgagaatagagtcaaattagacttaccaaatccaagtcacaaggaaaaccctttctttgattttgttgatt--------att |
310 |
Q |
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| T |
20425939 |
actttctggtgagaggtttgagaatcgagtcaaattagacttaccaaatccatttcaagaggaaaaccctttctttgattttattgattgtgatattatt |
20426038 |
T |
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| Q |
311 |
acctgaactctttgccttcnnnnnnnnnnnncacttgtattgtggaacctagctacccatgaattttaggtcattcctcccaacccagtcgagtatgtac |
410 |
Q |
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| T |
20426039 |
gccggaactctttgccttaaaaaacaaaaaacacttgtattgtggaacccagctacccatgaatctaaggtcattcctcctagtccggctgagtcgatac |
20426138 |
T |
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| Q |
411 |
cagcttattgagaggcttcaactttatttcatggatttggttatgaccatattcaagatgacattacagttattacgtatgtacatttttgtcaaataaa |
510 |
Q |
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| T |
20426139 |
caccttatcgagaggcttcgactttatttcatggatttggttatgaccatattcaagatgacattaagattattaggtatgtgcatttttgtcgaataaa |
20426238 |
T |
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| Q |
511 |
tggtcgaggtcttctacttcttaatgtgtgacaggaagatgtg |
553 |
Q |
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|||| ||||||||| |||||| |||||| ||| |||||||||| |
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| T |
20426239 |
tggtggaggtcttcaacttctcaatgtgcgacgggaagatgtg |
20426281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 468
Target Start/End: Complemental strand, 44938418 - 44938292
Alignment:
| Q |
342 |
cacttgtattgtggaacctagctacccatgaattttaggtcattcctcccaacccagtcgagtatgtaccagcttattgagaggcttcaactttatttca |
441 |
Q |
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| T |
44938418 |
cacttgtattgtggaatccagctacccatgaattcaagaccattcctcccagccccgttgagtctttaccaccttatcgggaggtttcgattggtcttca |
44938319 |
T |
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| Q |
442 |
tggatttggttatgaccatattcaaga |
468 |
Q |
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| T |
44938318 |
tgggtttggttatgaccatattaaaga |
44938292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 44919255 - 44919175
Alignment:
| Q |
220 |
ctttctgatgataagtttgagaatagagtcaaattagacttaccaaatccaagtcacaaggaaaaccctttctttgatttt |
300 |
Q |
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||||||| ||||| || ||||||| ||| ||||||||||| ||| |||||| ||| |||||||| ||||||||||||| |
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| T |
44919255 |
ctttctggtgataggtatgagaatctagtaaaattagactttccagatccaattcaagaggaaaactttttctttgatttt |
44919175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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