View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_22 (Length: 248)
Name: NF1871_low_22
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 1903450 - 1903208
Alignment:
| Q |
7 |
gtgagatgaataaacgaacttaaacttttcagtactaaaattttgatgatctcattaaataa-------tgaaaaaatatttcattgtaaggaagccaat |
99 |
Q |
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| T |
1903450 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatatttcattgtaaggaagccaat |
1903351 |
T |
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| Q |
100 |
tgtgacacattctagtaaatactatgcagcaccgaccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtg |
199 |
Q |
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| T |
1903350 |
tgtgacacattctagtaaatactatgcagcaccga----tacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtg |
1903255 |
T |
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| Q |
200 |
tcagacatagacatgcgtgttacatccaatcttttccatttcatcaa |
246 |
Q |
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| T |
1903254 |
tcagacatagacatgcatgttacatccaatcttttccatttcatcaa |
1903208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 1907683 - 1907441
Alignment:
| Q |
7 |
gtgagatgaataaacgaacttaaacttttcagtactaaaattttgatgatctcattaaataa-------tgaaaaaatatttcattgtaaggaagccaat |
99 |
Q |
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| T |
1907683 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatctcattaaataacaagaaatgaaaaaatatttcattgtaaggaagccaat |
1907584 |
T |
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| Q |
100 |
tgtgacacattctagtaaatactatgcagcaccgaccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtg |
199 |
Q |
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| T |
1907583 |
tgtgacacattctagtaaatactatgcagcaccga----tacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtg |
1907488 |
T |
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| Q |
200 |
tcagacatagacatgcgtgttacatccaatcttttccatttcatcaa |
246 |
Q |
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| T |
1907487 |
tcagacatagacatgcatgttacatccaatcttttccatttcatcaa |
1907441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 1898006 - 1897876
Alignment:
| Q |
106 |
acattctagtaaatactatgcagcaccgaccgatacttcacattgaaggcgtgttcagtgttcaacaggcattagtgtttggcacgtgctggtgtcagac |
205 |
Q |
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| T |
1898006 |
acattctagtaaatactatgtagcactga----tacttcatattgaaaacgtgttcagtgtccaacatgtatcgatgtctggcacgtgctggtgtcggac |
1897911 |
T |
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| Q |
206 |
atagacatgcgtgttacatccaatcttttccattt |
240 |
Q |
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| T |
1897910 |
atagacatgcatgttaaattcaatcatttccattt |
1897876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 1898150 - 1898089
Alignment:
| Q |
7 |
gtgagatgaataaacgaacttaaacttttcagtactaaaattttgatgatctcattaaataa |
68 |
Q |
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| T |
1898150 |
gtgaaatgaataaaggaactgaaacttttcagtactaaaattttgatgatcccattaaataa |
1898089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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