View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_24 (Length: 242)
Name: NF1871_low_24
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 33232754 - 33232994
Alignment:
| Q |
1 |
accgtcgccccatgattgtatgctttcccaccataaaaattagaagttactattgatagcttc------------aacttcaacgtgaattttctttata |
88 |
Q |
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| T |
33232754 |
accgtcgccccatgattgtatgctttcccaccataaaaattagaagttactattgatagcttcagcttcaacttcaacttcaacgtgaattttctttgta |
33232853 |
T |
|
| Q |
89 |
atttcaaaatctcccatcatatatctagacactcaattttttatcgaatagtttagtgattataaattcatcttttaaaataaatagtgaaggtattaaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || | | | |
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| T |
33232854 |
atttcaaaatctcccatcatatatctagacactcgattttttatcgagtagtttagtgattataaattcatcttttaagataaatagtgaaagtttcaga |
33232953 |
T |
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| Q |
189 |
aatttgaacatcaatccctacatatataatataatgttctt |
229 |
Q |
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| || |||||||||||||||||||||||||||||||||||| |
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| T |
33232954 |
agttcgaacatcaatccctacatatataatataatgttctt |
33232994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 44976591 - 44976633
Alignment:
| Q |
125 |
ttttttatcgaatagtttagtgattataaattcatcttttaaa |
167 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
44976591 |
ttttttatcaaatagtttagtagttataaattcatcttttaaa |
44976633 |
T |
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