View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_26 (Length: 231)
Name: NF1871_low_26
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 33269632 - 33269421
Alignment:
| Q |
1 |
ataatgaccactgtcaagctaaaaagtgaagaaaatagctaatttgaactgcattagaaattgccttaccggtgtagtgtccccttgcaaaattattagc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33269632 |
ataatggccactgtcaagctaaaaagtgaagaaaatagctaatttgaactgtattagaaattgccttaccggtgtagtgtccccttgcaaaattattagc |
33269533 |
T |
|
| Q |
101 |
ggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtacgaaccagttcttacttcatcgattacagtgggttccagatcaacaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
33269532 |
ggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtaagaaccagttcttacttcatcgataacagtaggttccagatcaacaaat |
33269433 |
T |
|
| Q |
201 |
aaggcccttggt |
212 |
Q |
| |
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|||||||||||| |
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| T |
33269432 |
aaggcccttggt |
33269421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 211
Target Start/End: Original strand, 10033406 - 10033545
Alignment:
| Q |
72 |
gtgtagtgtccccttgcaaaattattagcggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtacgaaccagttcttacttcat |
171 |
Q |
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||||| ||||| ||||||||||||||||| |||||||| ||||||| |||||| || || || |||||||||||||| || | ||||| ||| | ||||| |
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| T |
10033406 |
gtgtaatgtcctcttgcaaaattattagcagcatcttctttgccagtaattaactgttctggatgaaaaagttgtctataaggaccagatctaatttcat |
10033505 |
T |
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| Q |
172 |
cgattacagtgggttccagatcaacaaataaggcccttgg |
211 |
Q |
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| T |
10033506 |
caattacagtaggctctagatcaacaaatagagcccttgg |
10033545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 35670341 - 35670462
Alignment:
| Q |
72 |
gtgtagtgtccccttgcaaaattattagcggcatcttccttgccagaaattaattgctcagggtgaaaaagttgtctgtacgaaccagttcttacttcat |
171 |
Q |
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||||||||||| || |||||||| |||||||| ||||| ||||| || || | ||| |||||||| || ||||||| ||| | ||| | | ||||||| |
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| T |
35670341 |
gtgtagtgtcctctagcaaaattgttagcggcgtcttctttgccggagatgagttgttcagggtggaagagttgtcggtaggtaccggaacgaacttcat |
35670440 |
T |
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| Q |
172 |
cgattacagtgggttccagatc |
193 |
Q |
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|||| || |||||||| ||||| |
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| T |
35670441 |
cgatgacggtgggttcaagatc |
35670462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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