View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_27 (Length: 226)
Name: NF1871_low_27
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 52348966 - 52349166
Alignment:
| Q |
19 |
taaaaagaaacaaaaacaaccgacaacnnnnnnnnatactcaatgtgcaatttttacggtgaaaacaattgcaaactctcatgacatacaactatactca |
118 |
Q |
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| T |
52348966 |
taaaaagaaacaaaaacaaccgacaacttttttttatactcaatgtgcaatttttacggtgaaaacaattgcaaactctcatgacatacagctatactca |
52349065 |
T |
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| Q |
119 |
agcatccgatacaccaaaaagactcaagttgatttgctgaagaaaactcaaattaactctccatatttataataacattttacctcttttttcttctcac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52349066 |
agcatccgatacaccaaaaagactcaagttgatttgctgaagaaaactcaaattaactctccatatttataataacattttacctcttttttcttctcac |
52349165 |
T |
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| Q |
219 |
t |
219 |
Q |
| |
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| |
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|
| T |
52349166 |
t |
52349166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 35875655 - 35875713
Alignment:
| Q |
161 |
aaaactcaaattaactctccatatttataataacattttacctcttttttcttctcact |
219 |
Q |
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| T |
35875655 |
aaaactcaaattaactttccatttttataataacaatctacctatttcttcttcacact |
35875713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 36071576 - 36071608
Alignment:
| Q |
161 |
aaaactcaaattaactctccatatttataataa |
193 |
Q |
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| T |
36071576 |
aaaactcaaattaactcttcatatttataataa |
36071608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 15230424 - 15230388
Alignment:
| Q |
156 |
tgaagaaaactcaaattaactctccatatttataata |
192 |
Q |
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|||| |||||||||| ||||||||||||||||||||| |
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| T |
15230424 |
tgaaaaaaactcaaactaactctccatatttataata |
15230388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 8161365 - 8161329
Alignment:
| Q |
158 |
aagaaaactcaaattaactctccatatttataataac |
194 |
Q |
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||||||| ||||||||||||| ||||||||||||||| |
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| T |
8161365 |
aagaaaattcaaattaactcttcatatttataataac |
8161329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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