View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_5 (Length: 463)
Name: NF1871_low_5
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_5 |
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| [»] scaffold1138 (1 HSPs) |
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Alignment Details
Target: scaffold1138 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold1138
Description:
Target: scaffold1138; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 64 - 446
Target Start/End: Original strand, 1 - 383
Alignment:
| Q |
64 |
gtagaccagactctgatcttaaaattttggacacgtcagacttagacattgcaaagcctaactcggtctaacatattcacacccctaacagtaacactcc |
163 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1 |
gtagaccagactctgatcttaaaattttggacacgctagacttagacattgcaaagtctaactcggtctaacatattcacacccctaactgtaacactcc |
100 |
T |
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| Q |
164 |
atactcatttctgctttcaggattgttaattaacttcacaaatcaacaaaagtatttttaatgtgttttattatcactcatatattttgcagaaaactta |
263 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
101 |
atactcatttatgctttcaggattgttaattaacttcacaaatcaacaaaagtatttttaatttgttttattatcactcatatattttgcagaaaacttc |
200 |
T |
|
| Q |
264 |
cgggaaggtcaatcatcctaaaattattctaactcaaacatgcttaactgcgtagttcttattgcatactctactgaaaagaagaagcattttattgata |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||| |
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| T |
201 |
tgggaaggtcaatcatcctaaaattattctaactcaaacatgcttaactgcgtagttcttactgcatactctactgaaaagaagaagcatcttgttgata |
300 |
T |
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| Q |
364 |
tatgtagtattaataaatccatacatgccctccaactgtatagtctcgtaccttcataatctaaggacttctctcattcctat |
446 |
Q |
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| T |
301 |
tatgtagtattaataaatccatatatgccctccaactatataatctcgtaccttcaaaatctaaggacttctctcattcctat |
383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 17391806 - 17392023
Alignment:
| Q |
15 |
actttcagaaagtcagattcatgcttaaaaagtaagtctatgacacaccgtagaccagactctgatcttaaaattttggacacgtcagacttagacattg |
114 |
Q |
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| T |
17391806 |
actttcagaaagtcagactcatgcttaaaaagtaagtctatgacacacagtagaccagactctgatcttaaaattttggacacgctagacttagacattg |
17391905 |
T |
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| Q |
115 |
caaagcctaactcggtctaacatattcacacccctaacagtaacactccatactcatttctgctttcaggattgttaattaacttcacaaatcaacaaaa |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17391906 |
caaagtctaactcggtctaacatattcacacccctaactgtaacactccatactcatttatgctttcaggattgttaattaacttcacaaatcaacaaaa |
17392005 |
T |
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| Q |
215 |
gtatttttaatgtgtttt |
232 |
Q |
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| T |
17392006 |
gtatttttaatttgtttt |
17392023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 14346488 - 14346558
Alignment:
| Q |
80 |
tcttaaaattttggacacgtcagacttagacattgcaaagcctaactcggtctaacatattcacaccccta |
150 |
Q |
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| T |
14346488 |
tcttaaaaattttgacaggtcagacttagaccttgcaaaacttaactcggtctagcctatttccaccccta |
14346558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 29571032 - 29570973
Alignment:
| Q |
16 |
ctttcagaaagtcagattcatgcttaaaaagtaagtctatgacacaccgtagaccagact |
75 |
Q |
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| T |
29571032 |
ctttcagaaggtcaggttcaggcctaaaaagtaagtctatgacagaccgtaggccagact |
29570973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 10622639 - 10622595
Alignment:
| Q |
13 |
atactttcagaaagtcagattcatgcttaaaaagtaagtctatga |
57 |
Q |
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| T |
10622639 |
atactttcagaaggtcagactcaagcttaaaaagtaagcctatga |
10622595 |
T |
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