View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_6 (Length: 440)
Name: NF1871_low_6
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 16955277 - 16955688
Alignment:
| Q |
13 |
aaaatataaataaaaggaaaaattgatgaacaagtatttagtgaattctggtaacaaagataattttaaaactgtgataattaatcatgctcatacaata |
112 |
Q |
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| T |
16955277 |
aaaatataaataaaaggaaaaattgatgaacaagtatttagtgaattctggtaacaaagataattttaaaactgtgataattaatcatgctcatacaata |
16955376 |
T |
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| Q |
113 |
t---gtataatataaaatgaaacattttgtacaaagtagcatacaccctataaatttcatagtaaccttatgtctctcttgaggatgatataggtgagtc |
209 |
Q |
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| T |
16955377 |
ttatgtata-tataaaatgaaacattttgtacaaagtagcatacaccctataaatttcatagtaaccttatatctctcttgaggatgatataggtgagtc |
16955475 |
T |
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| Q |
210 |
tctatgatcacttgtttctcttttccatgaattctgaacttgtgctgcaaactgtaaattccaaagaatatcttccacagaaggtctttcatttggttca |
309 |
Q |
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| T |
16955476 |
tctatgatcacttgtttctcttttccatgaattctgaacttgtgctgcaaactgtaaattccaaagaatatcttccacagaaggtctttcatttggttca |
16955575 |
T |
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| Q |
310 |
ctagaaagacaccttacacatatctccatcattttcattaatgattcatctgaacattccttatgaacaaatggatcaacaatactccttcttgctatat |
409 |
Q |
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| T |
16955576 |
ctagaaagacaccttacacatatctccatcattttcatcaatgattcatctgaacattccttatgaacaaatggatcaacaatactccttcttgctatat |
16955675 |
T |
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| Q |
410 |
catcggtttttat |
422 |
Q |
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| T |
16955676 |
catcggtttttat |
16955688 |
T |
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