View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_7 (Length: 437)
Name: NF1871_low_7
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 28 - 374
Target Start/End: Complemental strand, 36850065 - 36849725
Alignment:
| Q |
28 |
ttgacatgatccacctctccaaacctgaaataccacttgaatcttcaattaaggatttgctcctctatgtaattttaataatggccagaagaaatgttga |
127 |
Q |
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| T |
36850065 |
ttgacatgatccacctctccaaacctgaaataccacttgaatcttcaattaaggatttgctcctctatgtaattttaataatggccagaagaaatgttga |
36849966 |
T |
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| Q |
128 |
aaaaggagaagttgggtaaagtgacggtggaaaagaacatgaaatttcattattatnnnnnnnnnnnnnnnnnnntgtcattttcacactaatatatccc |
227 |
Q |
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| T |
36849965 |
aaaaggagaagttgggtaaagtgacggtggaaaagaacatgaaatttcattattattaataataatata------tgtcattttcacactaatatatccc |
36849872 |
T |
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| Q |
228 |
catcattatcaaacttctatataagccaagcattcttcaaaagactttgtgttctttttgaaaacaacaagaagatcagagctaattctattctcaaaaa |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36849871 |
catcattatcaaacttctatataagccaagcattcttcaaaagactttgtgttctttttgaaaacaacaagaagatcagagctaattctcttctcaaaaa |
36849772 |
T |
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| Q |
328 |
cttatatactaataccatataaaaggctttctaacaaacgttttagt |
374 |
Q |
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| T |
36849771 |
cttatatactaataccatataaaagtctttctaacaaacgttttagt |
36849725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 394 - 427
Target Start/End: Complemental strand, 36849706 - 36849673
Alignment:
| Q |
394 |
caattgagtaatactcaatcatatatggcctatg |
427 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
36849706 |
caattgagtaatactcaatcatatatggcctatg |
36849673 |
T |
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