View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1871_low_8 (Length: 412)
Name: NF1871_low_8
Description: NF1871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1871_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 29596366 - 29596732
Alignment:
| Q |
11 |
cagagaatcgggttttcggtcactacactagggttctcgtggacctagattgtaaaatgaaccactgcaagcatatgactaacagcacaaaagaaactgt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29596366 |
cagagaatcgggttttcggtcactacactagggttctcgtggacctagattgtaaaatgaaccactgcaagcatatgactaacagcacaaaagaaactgt |
29596465 |
T |
|
| Q |
111 |
taagatattaaataagagcatatgtgcttttcacactacagaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29596466 |
taagatattaaataagagcatatgtgcttttcacactacagaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataat |
29596565 |
T |
|
| Q |
211 |
tcaaagattgatagagaattaccaatcaacaaaacattggggaataaccaaaagtcactaaattaatgagaggagtacatttttatccatagccaataag |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29596566 |
tcaaagattgatagagaattaccaatcaacaaaacattggggaataaccaaaagtcactaaattaatgagaggagtacatttttatccatagccaataag |
29596665 |
T |
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| Q |
311 |
tcaatattaaactcaattagtcaacactttcaaagaaatccaaaagagacatcatgccaccatctaa |
377 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29596666 |
tcaatattaaactcaattagtcaacactttcaaagaaatccaaaagagacatcaggccaccatctaa |
29596732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 150 - 359
Target Start/End: Complemental strand, 29648785 - 29648579
Alignment:
| Q |
150 |
agaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattg |
249 |
Q |
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|||||||||| ||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
29648785 |
agaagtagaagccatgttatattctcttgatgctgagcttactggaattagcagaaataattcaaagattggtagagaattaccaatcaacaaaactttg |
29648686 |
T |
|
| Q |
250 |
gggaataaccaaaagtcactaaattaatgagaggagtacatttttatccatagccaataagtcaatattaaactcaattagtcaacactttcaaagaaat |
349 |
Q |
| |
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||||| ||||||||| |||||||||||| ||| |||||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||| |||| |
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| T |
29648685 |
gggaacaaccaaaagacactaaattaataagaagagtacattt---tccatagccaatgagtcggtattaaactctattagtcaacactttcaaaaaaat |
29648589 |
T |
|
| Q |
350 |
ccaaaagaga |
359 |
Q |
| |
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|||| ||||| |
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| T |
29648588 |
ccaagagaga |
29648579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 150 - 396
Target Start/End: Complemental strand, 29643566 - 29643326
Alignment:
| Q |
150 |
agaagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattg |
249 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
29643566 |
agaagtagaagccatgttatattctcttgatgctgagcttactggaattagcagaaataattcaaagattggtagagaattaccaatcaacaaaactttg |
29643467 |
T |
|
| Q |
250 |
gggaataaccaaaagtcactaaattaatgagaggagtacatttttatccata---gccaataagtcaatattaaactcaattagtcaacactttcaaaga |
346 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||| |||||||||| ||||||| |||||| | || ||| |||||| ||||||||||||||||||||| |
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| T |
29643466 |
gggaacaaccaaaagaaactaaattaataagaagagtacatttg-atccataatagccaatgaatcggtatcaaactctattagtcaacactttcaaaga |
29643368 |
T |
|
| Q |
347 |
aatccaaaagagacatcatgccaccatctaaaactatcttatataaaatg |
396 |
Q |
| |
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||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
29643367 |
aatccaagagagacat--------catctaaaactatcttatataaaatg |
29643326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 29648911 - 29648838
Alignment:
| Q |
72 |
ccactgcaagcatatgactaacagcacaaaagaaactgttaagatattaaataagagcatatgtgcttttcaca |
145 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
29648911 |
ccactgaaagcatatgactaacagcacaaatgaagttgttaagatattaaatgagagcatatgtacttttcaca |
29648838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 152 - 258
Target Start/End: Complemental strand, 19820260 - 19820154
Alignment:
| Q |
152 |
aagtagaaaccatgttatattctcttgatgtttagctttctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattggg |
251 |
Q |
| |
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|||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
19820260 |
aagtagaagccatgatatattctcttgatgccaagcttgctgaaattagcagaaataattcaaagattgatagggaattaccaatcaacaaaactttgga |
19820161 |
T |
|
| Q |
252 |
gaataac |
258 |
Q |
| |
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||||||| |
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| T |
19820160 |
gaataac |
19820154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 20863668 - 20863729
Alignment:
| Q |
191 |
ctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattgggg |
252 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| |||| ||||||||| ||||| |||||| |
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|
| T |
20863668 |
ctgaaatttgcagaaagaattcaaagattgatagggaatcaccaatcaagaaaactttgggg |
20863729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 24253968 - 24254029
Alignment:
| Q |
191 |
ctgaaattagcagaaataattcaaagattgatagagaattaccaatcaacaaaacattgggg |
252 |
Q |
| |
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|||||||| || |||| ||||||||| ||||||| |||||| ||||||||||||| |||||| |
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| T |
24253968 |
ctgaaatttgctgaaagaattcaaagtttgatagggaattatcaatcaacaaaactttgggg |
24254029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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