View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_high_13 (Length: 344)
Name: NF18720_high_13
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 344
Target Start/End: Complemental strand, 39933951 - 39933614
Alignment:
| Q |
11 |
tgaaaatgggaataaaaatttagtgggcctggagcccttgaacaccctggatcctccaacaaatagacatataacaggctaggctnnnnnnntatggacg |
110 |
Q |
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| T |
39933951 |
tgaaaatgggaataaaaatttagtgggcctggagcccttgaacaccctggatccaccaacaaatagacatatagcaggctaggctaaaaaaatatggacg |
39933852 |
T |
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| Q |
111 |
atcttacttttatcacactatatgtttctcgcgtgtcctactgaacggtaattaaccaccgttcagnnnnnnnnctaggtgcctaaagagcaatttcctt |
210 |
Q |
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| T |
39933851 |
atcatacttttatctcactatatgtttcttgcgtgtcctactgaatggtaattaaccaccgttcagtttttttactaagtgcctaaagagcaatttcctt |
39933752 |
T |
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| Q |
211 |
ataagggta----nnnnnnnnatcttttgggggcttatgaggaattagggggtccataaaacaattctcaagtaacaatatccgtagaagaaatataaca |
306 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39933751 |
ataagggtattttttttttttatcttttgggggcttatgaggaattagggggtccataaaacaattctcaagtaacaatatccgtagaagaaatataaca |
39933652 |
T |
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| Q |
307 |
cagcatggtctnnnnnnntaaaagacaaattgttttcc |
344 |
Q |
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||||||||||| |||||||||||||||||||| |
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| T |
39933651 |
cagcatggtctaaaaaaataaaagacaaattgttttcc |
39933614 |
T |
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