View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_high_15 (Length: 299)
Name: NF18720_high_15
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 19597580 - 19597310
Alignment:
| Q |
18 |
tcttcatcagagaaaccaccatcttcactgcagccacatcaatcttcactgccaccaaggccattttcattcctgcgaagaagaacgcaatctttaacgg |
117 |
Q |
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| T |
19597580 |
tcttcatcagagaaaccaccatcttcactgcagccacagcaatcttcattgccacgaaggccgttttcattcctgcgaagaagaacgcaatctttaacgg |
19597481 |
T |
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| Q |
118 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatcattctattctaccaacaaatctgtcgctggtaccatcttcttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19597480 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatcattctattctaccaacaaatctgtcgctggtaccatcttcttc |
19597381 |
T |
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| Q |
218 |
atcacagccacctcgaacactgtattatgatatggtaccgtattggccactacgaccaccttgttattctt |
288 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19597380 |
atcacagccacctcgaacactgtattataatatggtaccgtattggccactacgaccaccttgttactctt |
19597310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 19592874 - 19592817
Alignment:
| Q |
118 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
175 |
Q |
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|||||||||| ||||||||| |||||| |||| |||||| ||||| |||||||||||| |
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| T |
19592874 |
agctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatca |
19592817 |
T |
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