View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_high_16 (Length: 285)
Name: NF18720_high_16
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 46809759 - 46810027
Alignment:
| Q |
1 |
tctaagcctccaagtgaagcttccaatccaaagaaggaaccctctttagcttgagatccaggactaacaaaatccatataccttcttgtttctgcatacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
46809759 |
tctaagcctccaagtgaagcttccaatccaaagaaggaaccctctttagcttgagatccaggactgacaaaatccatataccttcttgtttcagcatacc |
46809858 |
T |
|
| Q |
101 |
tgtgcaagtgaaagtaaataaatcacatgtcctgtaaggataacgaaaatatagatagctcaactcatcaagcagaagttggaagcctgtgactaaaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46809859 |
tgtgcaagtgaaagtaaataaatcacatgtcctgtaaggataacgaaaatatagaaagctcaactcatcaagcagaagttggaagcctgtgactaaaatc |
46809958 |
T |
|
| Q |
201 |
gtaccccatcaagagtagttgaacaacaacgagcgtccctgtgttggcaaactcgtattttactgcacc |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46809959 |
gtaccccatcaagagtagttgaacaacaacgagcgtccctgtgttggcaaactcgtattttactgcacc |
46810027 |
T |
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