View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18720_high_17 (Length: 250)

Name: NF18720_high_17
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18720_high_17
NF18720_high_17
[»] chr4 (2 HSPs)
chr4 (10-153)||(69504-69647)
chr4 (189-246)||(69416-69473)
[»] chr3 (4 HSPs)
chr3 (10-146)||(17542543-17542679)
chr3 (189-250)||(17542717-17542778)
chr3 (10-130)||(9104424-9104543)
chr3 (189-246)||(9104315-9104372)
[»] chr5 (3 HSPs)
chr5 (10-153)||(6308876-6309018)
chr5 (189-246)||(6308788-6308845)
chr5 (200-246)||(27026764-27026810)
[»] chr1 (3 HSPs)
chr1 (10-153)||(6836121-6836265)
chr1 (189-231)||(6836056-6836098)
chr1 (10-95)||(33007530-33007614)
[»] chr2 (6 HSPs)
chr2 (28-153)||(44788725-44788850)
chr2 (8-106)||(1193862-1193958)
chr2 (189-246)||(44788637-44788694)
chr2 (196-246)||(1193741-1193791)
chr2 (36-101)||(29270919-29270984)
chr2 (119-153)||(1193829-1193863)
[»] chr8 (8 HSPs)
chr8 (35-153)||(22816217-22816335)
chr8 (37-153)||(40841345-40841461)
chr8 (10-85)||(35840596-35840670)
chr8 (76-153)||(35839332-35839409)
chr8 (196-246)||(35839244-35839294)
chr8 (189-246)||(22816366-22816423)
chr8 (14-59)||(22816173-22816218)
chr8 (189-246)||(40841492-40841548)
[»] chr7 (4 HSPs)
chr7 (10-153)||(9993506-9993654)
chr7 (13-153)||(11036192-11036340)
chr7 (52-128)||(3691753-3691829)
chr7 (196-246)||(11036378-11036428)
[»] scaffold0013 (2 HSPs)
scaffold0013 (61-153)||(242962-243053)
scaffold0013 (190-246)||(243085-243141)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 69647 - 69504
Alignment:
Q  10 acaaaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctcttttcat 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  69647 acaaaggcaccacacagaaaataattatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcat 69548  T
Q  110 tttccttaattaatcaaaatctaacatgtccttctcaacatcac 153  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  69547 tttccttaattaatcaaaatctaacatgtccttctcagcatcac 69504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 69473 - 69416
Alignment:
Q  189 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  69473 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 69416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 146
Target Start/End: Original strand, 17542543 - 17542679
Alignment:
Q  10 acaaaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctcttttcat 109  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17542543 acaaaggcaccacacagaaaataattatatatctaacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcat 17542642  T
Q  110 tttccttaattaatcaaaatctaacatgtccttctca 146  Q
    |||||||||||||||||||||||||||||||||||||    
T  17542643 tttccttaattaatcaaaatctaacatgtccttctca 17542679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 17542717 - 17542778
Alignment:
Q  189 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataaccac 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17542717 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataaccac 17542778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 130
Target Start/End: Complemental strand, 9104543 - 9104424
Alignment:
Q  10 acaaaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctcttttcat 109  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| ||| | |||| |||| | | |||||||| | |||||||||| |||||||||||||    
T  9104543 acaaaggcaccacacagaaa-taattatatatctcacatcaccaagaacatgatccaaaatagtcttttcaatcaaactcacatttccatctcttttcat 9104445  T
Q  110 tttccttaattaatcaaaatc 130  Q
    |||| ||| ||||||||||||    
T  9104444 tttcattagttaatcaaaatc 9104424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 9104372 - 9104315
Alignment:
Q  189 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  9104372 caattatcattccacatcacaacatacacaactatcatataagactcaattaaaataa 9104315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 6309018 - 6308876
Alignment:
Q  10 acaaaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctcttttcat 109  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||||    
T  6309018 acaaaggcaccacacagaaaataattatatatctcacatcaccatgaacatgatcaaaa-caatcttttcaataagactcacattttcatctcttttcat 6308920  T
Q  110 tttccttaattaatcaaaatctaacatgtccttctcaacatcac 153  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  6308919 tttccttaattaatcaaaatctaacatgtccttctcagcatcac 6308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 6308845 - 6308788
Alignment:
Q  189 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6308845 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 6308788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 246
Target Start/End: Complemental strand, 27026810 - 27026764
Alignment:
Q  200 ccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    |||||| | |||||||||||||||||||||||| |||||||||||||    
T  27026810 ccacattatatcatacacaactatcatataaaaatcaattaaaataa 27026764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 6836265 - 6836121
Alignment:
Q  10 acaaaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctctttt-ca 108  Q
    |||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |     
T  6836265 acaaaggcaccacatagaaaatatttatatatctcacatcaccatgaatatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcct 6836166  T
Q  109 ttttccttaattaatcaaaatctaacatgtccttctcaacatcac 153  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  6836165 ttttccttaattaatcaaaatctaacatgtccttctcagcatcac 6836121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 6836098 - 6836056
Alignment:
Q  189 caattaacattccacatcacatcatacacaactatcatataaa 231  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6836098 caattaacattccacatcacatcatacacaactatcatataaa 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 33007530 - 33007614
Alignment:
Q  10 acaaaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattt 95  Q
    ||||| |||||||||| ||| ||||||||||||||| |||||||  || |  |||||  |||| ||||||||||| ||||||||||    
T  33007530 acaaaagcactacacacaaa-taattatatatctcatatcaccaaaaacataatcaatgacaacattttcaataaaactcacattt 33007614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 44788850 - 44788725
Alignment:
Q  28 aaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctcttttcattttccttaattaatcaaa 127  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44788850 aaataattatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcatttttcttaattaatcaaa 44788751  T
Q  128 atctaacatgtccttctcaacatcac 153  Q
    ||||||||||||||||||| ||||||    
T  44788750 atctaacatgtccttctcagcatcac 44788725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 1193958 - 1193862
Alignment:
Q  8 aaacaaaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctctttt 106  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||  |||| |||||||||||||||    
T  1193958 aaacaaaggcaccacacagaaa-taattatatatctcacatcaccatgaacatgatcataaacaatcttttcaataa-tctcatattttcatctctttt 1193862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 44788694 - 44788637
Alignment:
Q  189 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44788694 caattaacattccacatcacatcatacacaactatcttataaaactcaattaaaataa 44788637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 1193791 - 1193741
Alignment:
Q  196 cattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1193791 cattccgcatcacatcatacacaactatcatataaaactcaattaaaataa 1193741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 29270984 - 29270919
Alignment:
Q  36 atatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatct 101  Q
    |||||||||||| |  |||||| | ||||||| |||||||||||||||| |||||||||| |||||    
T  29270984 atatatctcacaccgtcatgaacatgatcaaagacaatattttcaataaaactcacatttccatct 29270919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Complemental strand, 1193863 - 1193829
Alignment:
Q  119 ttaatcaaaatctaacatgtccttctcaacatcac 153  Q
    ||||||||||||||||||||| |||||||||||||    
T  1193863 ttaatcaaaatctaacatgtctttctcaacatcac 1193829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 35 - 153
Target Start/End: Original strand, 22816217 - 22816335
Alignment:
Q  35 tatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatctaac 134  Q
    ||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  22816217 tatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaataagactcacattttcatctcttttcattttttttaattaatcaaaatctaac 22816316  T
Q  135 atgtccttctcaacatcac 153  Q
    |||||||||||| ||||||    
T  22816317 atgtccttctcagcatcac 22816335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 40841345 - 40841461
Alignment:
Q  37 tatatctcacatcaccatgaatacgatcaaaaacaatattttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatctaacat 136  Q
    ||||||||||||||||| ||| | ||||||||| | | |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40841345 tatatctcacatcaccaagaacatgatcaaaaatagtcttttcaatcaaactcacattttcatctcttttcattttccttagttaatcaaaatctaacat 40841444  T
Q  137 gtccttctcaacatcac 153  Q
      | |||||| ||||||    
T  40841445 aactttctcagcatcac 40841461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 35840670 - 35840596
Alignment:
Q  10 acaaaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaataag 85  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  35840670 acaaaggcacgacacagaaa-taattatatatctcacatcaccatgaacacgatcaaaaacaatcttttcaataag 35840596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 35839409 - 35839332
Alignment:
Q  76 tttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatctaacatgtccttctcaacatcac 153  Q
    ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||    
T  35839409 tttcaataaaactcgcatttccatctcttttcattttccttaattaatcaaaatctaacatgtctttctaagcatcac 35839332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 35839294 - 35839244
Alignment:
Q  196 cattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35839294 cattccgcatcacatcatacacaactatcatataaaactcaattaaaataa 35839244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 22816366 - 22816423
Alignment:
Q  189 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  22816366 caattaacattccacatcacattatatacaactatcatataaaactcgattaaaataa 22816423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 22816173 - 22816218
Alignment:
Q  14 aggcactacacagaaaataattatatatctcacatcaccatgaata 59  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  22816173 aggcaccacacagaaaataattatatatctcacatcaccatgaata 22816218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 40841492 - 40841548
Alignment:
Q  189 caattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    |||||| |||||||| || ||||||||||||||||||||| |||||||| ||||||||    
T  40841492 caattatcattccacgtcgcatcatacacaactatcatat-aaactcaactaaaataa 40841548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 9993654 - 9993506
Alignment:
Q  10 acaaaggcactacacagaaaataattatatatctcacatcaccat------gaatacgatcaaaaacaatattttcaataagactcacattttcatctct 103  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||      ||| | ||||||||||||| |||||||||| ||||||||||||||||||    
T  9993654 acaaaggcaccacacagaaa-taattatatatctcacatcaccatcaccatgaacatgatcaaaaacaatcttttcaataaaactcacattttcatctct 9993556  T
Q  104 tttcattttccttaattaatcaaaatctaacatgtccttctcaacatcac 153  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  9993555 tttcattttccttaattaatcaaaatctaacatgtctttctcagcatcac 9993506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 11036192 - 11036340
Alignment:
Q  13 aaggcactacacagaaaataattatatatctcacatcaccatgaatacgatcaaaaacaatattttcaat---------aagactcacattttcatctct 103  Q
    ||||||| ||||||||| ||| ||||||||||||||||||||||| | ||||||||||||| ||||||||         || ||||||||||||||||||    
T  11036192 aaggcaccacacagaaa-taactatatatctcacatcaccatgaacatgatcaaaaacaatcttttcaatgaaacattgaaaactcacattttcatctct 11036290  T
Q  104 tttcattttccttaattaatcaaaatctaacatgtccttctcaacatcac 153  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  11036291 tttcattttccttaattaatcaaaatctaacatgtctttctcagcatcac 11036340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 3691829 - 3691753
Alignment:
Q  52 catgaatacgatcaaaaacaatattttcaataagactcacattttcatctcttttcattttccttaattaatcaaaa 128  Q
    |||||| | ||||||||||||| |||||||||| ||||||| ||||||||||||||  |||||||||||||| ||||    
T  3691829 catgaacatgatcaaaaacaatcttttcaataaaactcacactttcatctcttttccctttccttaattaataaaaa 3691753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 11036378 - 11036428
Alignment:
Q  196 cattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  11036378 cattccgcatcacatcacacacaactatcatataaaactcaattaaaataa 11036428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 242962 - 243053
Alignment:
Q  61 gatcaaaaacaatattttcaataagactcacattttcatctcttttcattttccttaattaatcaaaatctaacatgtccttctcaacatcac 153  Q
    ||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||    
T  242962 gatcaaaaacaatcttt-caataaaactcacattttcatctcttttcattttccttaattagtcaaaatctaacatgtctttctcagcatcac 243053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 243085 - 243141
Alignment:
Q  190 aattaacattccacatcacatcatacacaactatcatataaaactcaattaaaataa 246  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  243085 aattatcattccgcatcacatcatacacaactatcatataaaactcaattaaaataa 243141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University