View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18720_high_5 (Length: 496)
Name: NF18720_high_5
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_high_5 |
 | |
|
| [»] scaffold0166 (2 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 5e-91; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 31888236 - 31888492
Alignment:
| Q |
18 |
agtaaagaaaataaaataaaatatgcttaaacaattgaaatgaggtaacgaaagatttcattagatttcttgatttaaaacatgaaaacccattaattga |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31888236 |
agtaaagaaaataaaataaaatat--ttacacaattgaaatgaggtaacaaaagatttcattagatttcttgatttaaaacataaaaactcattaattga |
31888333 |
T |
|
| Q |
118 |
atgtgggctgaatttgtaaataacaaaaatatattcaaaatacgtaaaatgtaattatatgtttgactttatttaatgtagttcatattgttcattttaa |
217 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31888334 |
atgtggggtgaatatgtaaataacataaatatattcaaaatacgtaaaatgcaattatatgtttgactttatttaatgtagttcacattgttcattttaa |
31888433 |
T |
|
| Q |
218 |
ttggtccatgttagcagagggtattttacctaataatttagagagggtaatctagaaaaaa |
278 |
Q |
| |
|
|||||||| | ||| |||||| |||||| | ||||||||||||||||||||| |||||| |
|
|
| T |
31888434 |
ttggtccacatcagc-cagggta-tttacccattaatttagagagggtaatctaaaaaaaa |
31888492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 292 - 479
Target Start/End: Original strand, 26689640 - 26689832
Alignment:
| Q |
292 |
atgctatattttattagaattgtgaacactacaattacaggagttggtcatgggaatttatataaaagcaatgtgcaacagttctgcacaatcacat-at |
390 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
26689640 |
atgctatatataattagaattttgaacactacagttacaggagttggtcatgggaatttatataaaaacaatgtgcaactgttctgcacaatcacataat |
26689739 |
T |
|
| Q |
391 |
gataattcctaaaacatag--aaatttcctttatttgtggagctaaacattctggttaattgactgatgtga--gctgcaattacagctcttt |
479 |
Q |
| |
|
||| ||||||||||||||| || |||||||| ||||| |||||||| |||||||||| ||||||||| ||| ||| |||||||| |||||| |
|
|
| T |
26689740 |
gattattcctaaaacatagacaagtttcctttgtttgttgagctaaagattctggttagttgactgatttgaatgctccaattacaactcttt |
26689832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 292 - 479
Target Start/End: Original strand, 26959371 - 26959563
Alignment:
| Q |
292 |
atgctatattttattagaattgtgaacactacaattacaggagttggtcatgggaatttatataaaagcaatgtgcaacagttctgcacaatcacat-at |
390 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
26959371 |
atgctatatataattagaattttgaacactacagttacaggagttggtcatgggaatttatataaaaacaatgtgcaactgttctgcacaatcacataat |
26959470 |
T |
|
| Q |
391 |
gataattcctaaaacatag--aaatttcctttatttgtggagctaaacattctggttaattgactgatgtga--gctgcaattacagctcttt |
479 |
Q |
| |
|
||| ||||||||||||||| || |||||||| ||||| |||||||| |||||||||| ||||||||| ||| ||| |||||||| |||||| |
|
|
| T |
26959471 |
gattattcctaaaacatagacaagtttcctttgtttgttgagctaaagattctggttagttgactgatttgaatgctccaattacaactcttt |
26959563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 24765315 - 24765471
Alignment:
| Q |
18 |
agtaaagaaaataa-aataaaatatgcttaaacaattgaaatgaggtaacgaaagatttcattagatttcttgatttaaaacatgaaaacccattaattg |
116 |
Q |
| |
|
||||||||||| || ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| || || |||||||| |
|
|
| T |
24765315 |
agtaaagaaaaaaagaattaaatatgcctaaacaattgaaacgaggtaacgaaagatttcattagatttttttatttaaaacataaagacacattaatta |
24765414 |
T |
|
| Q |
117 |
aatgtgggctgaatttgtaaataacaaaaatatattcaaaatacgtaaaatgtaatt |
173 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24765415 |
aatgtggggtgagtatgtaaataacaaaaatatattcaaaatacgtaaaatataatt |
24765471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 24777662 - 24777718
Alignment:
| Q |
169 |
taattatatgtttgactttatttaatgtagttcatattgttcattttaattggtcca |
225 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| || ||||| |||||||||||| |
|
|
| T |
24777662 |
taattatatgtttgactttacttagtgtagttcacatatttcatcttaattggtcca |
24777718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 283
Target Start/End: Original strand, 19666672 - 19666700
Alignment:
| Q |
255 |
ttagagagggtaatctagaaaaaaccgaa |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19666672 |
ttagagagggtaatctagaaaaaaccgaa |
19666700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 281 - 479
Target Start/End: Original strand, 30106298 - 30106498
Alignment:
| Q |
281 |
gaaaggaatggatgctatattttattagaattgtgaacactacaattacaggagttggtcatgggaatttatataaaagcaatgtgcaacagttctgcac |
380 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
30106298 |
gaaaggaatggacactatattttattagaattgtgaacactactattaaaggagttggtcatgggaatttatataaaagcagtgtgcaacggttctgcac |
30106397 |
T |
|
| Q |
381 |
aatcacatatgataattcctaaaacat--agaaatttcctttatttgtggagctaaacattctggttaattgactgatgtgagctgcaattacagctctt |
478 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30106398 |
aatcacatatgataattcctaaaacatagagaagtttcctttatttgtggagctaaacattctggttagttgactgatgtgagctgcaattacagctctt |
30106497 |
T |
|
| Q |
479 |
t |
479 |
Q |
| |
|
| |
|
|
| T |
30106498 |
t |
30106498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 281 - 479
Target Start/End: Original strand, 30110932 - 30111132
Alignment:
| Q |
281 |
gaaaggaatggatgctatattttattagaattgtgaacactacaattacaggagttggtcatgggaatttatataaaagcaatgtgcaacagttctgcac |
380 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
30110932 |
gaaaggaatggacactatattttattagaattgtgaacactactattataggagttggtcatgggaatttatataaaagcagtgtgcaacggttctgcac |
30111031 |
T |
|
| Q |
381 |
aatcacatatgataattcctaaaacat--agaaatttcctttatttgtggagctaaacattctggttaattgactgatgtgagctgcaattacagctctt |
478 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30111032 |
aatcacatatgataattcctaaaacatagagaagtttcctttatttgtggagctaaacattctggttagttgactgatgtgagctgcaattacagctctt |
30111131 |
T |
|
| Q |
479 |
t |
479 |
Q |
| |
|
| |
|
|
| T |
30111132 |
t |
30111132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 25276632 - 25276719
Alignment:
| Q |
32 |
aataaaatatgcttaaacaattgaaatgaggtaacgaaagatttcattagatttcttgatttaaaacatgaaaacccattaattgaat |
119 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||||| |||||||||||||| || ||||||||||| ||||| ||| |||||||| |
|
|
| T |
25276632 |
aataaaatatgtctaaacaattgaaattagggaacgaactatttcattagatttttttatttaaaacataaaaacacataaattgaat |
25276719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 271 - 479
Target Start/End: Original strand, 48641242 - 48641455
Alignment:
| Q |
271 |
agaaaaaaccgaaaggaatggatgctatattttattagaattgtgaacactacaattacaggagttggtcatgggaatttatataaaagcaatgtgcaac |
370 |
Q |
| |
|
||||||| | |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48641242 |
agaaaaatcagaaaagaatggatgctatcttttattagaattgtgaacacaacaattacaggagttggtcatgggaatttatataaaagcaatgtgcaac |
48641341 |
T |
|
| Q |
371 |
agttctgcacaatcacatatgataattcctaaaacatagaaa-----tttcctttatttgtggagctaaacattctggttaattgactgatgtgagctgc |
465 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48641342 |
ggttctacacaatcacatatgataattcctaaaatatagagaagttgtttcctttatttgtggagctaaacattctggttagttgactgatgtgagctgc |
48641441 |
T |
|
| Q |
466 |
aattacagctcttt |
479 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48641442 |
aattacagctcttt |
48641455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 3793744 - 3793787
Alignment:
| Q |
32 |
aataaaatatgcttaaacaattgaaatgaggtaacgaaagattt |
75 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
3793744 |
aataaaatatgtttaaacaattgaaatgaggtaacgaaaaattt |
3793787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 67 - 277
Target Start/End: Original strand, 19346643 - 19346852
Alignment:
| Q |
67 |
gaaagatttcattagatttcttgatttaaaacatgaaaacccattaattgaatgtgggctgaatttgtaaataacaaaaatatattcaaaatacgtaaaa |
166 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19346643 |
gaaagagttcattagatttcttgatttaaaacataaaaacccattaattaaatgtggggagaatatgtaaataacaaaaatatattcaaaatacataaaa |
19346742 |
T |
|
| Q |
167 |
tgtaattatatgtttgactttatttaatgtagttcatattgttcattttaattggtccatgttagcagagggtattttacctaataatttagagagggta |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||||| | |||||||||||||||| |
|
|
| T |
19346743 |
tgtaattatatgtttgactttatttaatgtagttcatattgatcattttaattggtccacgtcagcagagggta-tttacccactaatttagagagggta |
19346841 |
T |
|
| Q |
267 |
atctagaaaaa |
277 |
Q |
| |
|
||||| ||||| |
|
|
| T |
19346842 |
atctaaaaaaa |
19346852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 281 - 442
Target Start/End: Original strand, 3640694 - 3640857
Alignment:
| Q |
281 |
gaaaggaatggatgctatattttattagaattgtgaacactacaattacaggagttggtcatgggaatttatataaaagcaatgtgcaacagttctgcac |
380 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
3640694 |
gaaaggaatggaagctatattttattagaattgtgaacactacaattacaggagttgatcatgggaatttatataaaagcaatgggcaacggttctgcac |
3640793 |
T |
|
| Q |
381 |
aatcacatatgataattcctaaaacat--agaaatttcctttatttgtggagctaaacattctg |
442 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
3640794 |
aatcacatatgataattcctaaagcatagagaagtttcctttatttgtggagctaaacattctg |
3640857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 281 - 479
Target Start/End: Complemental strand, 23871982 - 23871769
Alignment:
| Q |
281 |
gaaaggaatggatgctatattttattagaattgtgaacactacaattacaggagttggtcatgggaatttat----ataaaagcaatgtgcaacagt--- |
373 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
23871982 |
gaaagggatggatgctatattttattagaattgtgaacacggctgttacaggagttggtcatgggaatttatttatataaaagcaatgtgcaacggtcaa |
23871883 |
T |
|
| Q |
374 |
----tctgcacaatcacatatgataattcctaaaacat--agaaatttcctttatttgtggagctaaacattctggttaattgactgatgtga--gctgc |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
23871882 |
cggttctgcacaatcacatatgataattcctaaaacatagagaagtttcctttatttgctgagctaaacattctggttagttgactgatgtgaatgctgc |
23871783 |
T |
|
| Q |
466 |
aattacagctcttt |
479 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
23871782 |
aataacagctcttt |
23871769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 52 - 225
Target Start/End: Original strand, 26896016 - 26896188
Alignment:
| Q |
52 |
ttgaaatgaggtaacgaaagatttcattagatttcttgatttaaaacatgaaaacccattaattgaatgtgggctgaatttgtaaataacaaaaatatat |
151 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| || || |||||||| || || |||||||||||||| | ||| | |||||||||||||||||||| |
|
|
| T |
26896016 |
ttgaaatgaggcaacgaaagattttattagatttttt-atctaaaacataaagacacattaattgaatgtaagatgagtatgtaaataacaaaaatatat |
26896114 |
T |
|
| Q |
152 |
tcaaaatacgtaaaatgtaattatatgtttgactttatttaatgtagttcatattgttcattttaattggtcca |
225 |
Q |
| |
|
| |||||| ||||||| |||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
26896115 |
ttaaaatatgtaaaatataattatatgtttgactttaattaatgttgtttatattgtttattttaattggtcca |
26896188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 7812 - 7968
Alignment:
| Q |
18 |
agtaaagaaaataa-aataaaatatgcttaaacaattgaaatgaggtaacgaaagatttcattagatttcttgatttaaaacatgaaaacccattaattg |
116 |
Q |
| |
|
||||||||||| || ||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| || ||||||||||| || || |||||||| |
|
|
| T |
7812 |
agtaaagaaaaaaagaattaaatatgcctaaacaattgaaacgaggtaacgaaagatttcattagatttttttatttaaaacataaagacacattaatta |
7911 |
T |
|
| Q |
117 |
aatgtgggctgaatttgtaaataacaaaaatatattcaaaatacgtaaaatgtaatt |
173 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7912 |
aatgtggggtgagtatgtaaataacaaaaatatattcaaaatacgtaaaatataatt |
7968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 20045 - 20101
Alignment:
| Q |
169 |
taattatatgtttgactttatttaatgtagttcatattgttcattttaattggtcca |
225 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| || ||||| |||||||||||| |
|
|
| T |
20045 |
taattatatgtttgactttacttagtgtagttcacatatttcatcttaattggtcca |
20101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 45 - 278
Target Start/End: Original strand, 17705575 - 17705804
Alignment:
| Q |
45 |
taaacaattgaaatgaggtaacgaaagatttcattagatttcttgatttaaaacatgaaaacccattaattgaatgtgggctgaatttgtaaataacaaa |
144 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||||||||| ||||| |||||||| || || |||||||| ||||| || | | | ||||||||||||| |
|
|
| T |
17705575 |
taaacaattgaaatgaggcaacggaagattttattagattttttgatctaaaacataaagacacattaattaaatgtaggataagtatgtaaataacaaa |
17705674 |
T |
|
| Q |
145 |
aatatattcaaaatacgtaaaatgtaattatatgtttgactttatttaatgtagttcatattgttcattttaattggtccatgttagcagagggtatttt |
244 |
Q |
| |
|
||||||||||||||| ||||||| |||||||| ||||||||| ||||| | |||||||||||| ||||||||||||||| | ||||||||||| || |
|
|
| T |
17705675 |
aatatattcaaaatatgtaaaatataattata---ttgactttaattaatattgttcatattgtttattttaattggtccacataagcagagggta-att |
17705770 |
T |
|
| Q |
245 |
acctaataatttagagagggtaatctagaaaaaa |
278 |
Q |
| |
|
||| | ||||| || |||||||| ||||||||| |
|
|
| T |
17705771 |
acccataaatttggaaagggtaatatagaaaaaa |
17705804 |
T |
|
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