View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_high_7 (Length: 437)
Name: NF18720_high_7
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 32708561 - 32708962
Alignment:
| Q |
15 |
agcaaaggttcagaaacggctctcatgcactgcatcacattgtatgcaccatcgccgagtgattcagacatttgagactcacaagcaagagcattccatt |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708561 |
agcaaaggttcagaaacggctctcatgcactgcatgacattgtatgcaccatcgccaagtgattcagacatttgagactcacaagcaagagcattccatt |
32708660 |
T |
|
| Q |
115 |
gatcaagagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708661 |
gatcaagagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagt |
32708760 |
T |
|
| Q |
215 |
gtattgagggatgttgaaagtatcaagctcctcttcttttatggttccctaatccacagaaaaaaggaatttcatatatattaatatcttggtgaattcg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| |
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| T |
32708761 |
gtattgagggatgttgaaagtatcaagctcctcttcttttatggttccctaatccacataaaaaaggaatttc----atattagtatcttggtgaattcg |
32708856 |
T |
|
| Q |
315 |
atctatctagtagtgacgcatgatcaaatatcaacactaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagcc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32708857 |
atctatctagtagtgacgcatgatcaaatatcaacactaacacattatatttaggatgtcacaatttacctgcaagaccatatcattaagagctatagcc |
32708956 |
T |
|
| Q |
415 |
ataagt |
420 |
Q |
| |
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|||||| |
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| T |
32708957 |
ataagt |
32708962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 32627031 - 32627132
Alignment:
| Q |
164 |
aaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgttgaaagtatcaagctcctcttcttttatggttccc |
263 |
Q |
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|||||||||||| | | |||||||||||||||||| |||||||||||| ||| ||| ||||||||||||| || | ||||||||||||| ||||| |
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| T |
32627031 |
aaatgatccttcagtaataacttccaatttcacttcagatggagatggataatatataggaatgttgaaagtattgagtttctcttcttttatgattccc |
32627130 |
T |
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| Q |
264 |
ta |
265 |
Q |
| |
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|| |
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|
| T |
32627131 |
ta |
32627132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 27735949 - 27736133
Alignment:
| Q |
53 |
attgtatgcaccatcgccgagtgattcagacatttgagactcacaagcaagagcattccattgatcaagagcattccaattcacttcagaaactcccaat |
152 |
Q |
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||||||| || |||| | ||||||||| ||||||| ||| ||| | ||| ||||| || | |||||||||||||||||| ||||||||||| ||||| |
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| T |
27735949 |
attgtatccatcatctctgagtgattctgacatttcagattcaaagtcaaaggcattacaatcatcaagagcattccaattaacttcagaaacctccaat |
27736048 |
T |
|
| Q |
153 |
cgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgtattgagggatgttgaaagtat |
237 |
Q |
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|| |||| |||||||||||| |||||||||||||| |||||||| |||||||||||| || | ||||||||||||||||| |
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| T |
27736049 |
ttattgatgacaaatgatccttcattgagaacttccaacttcacttcagatggagatggataataattagggatgttgaaagtat |
27736133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 233
Target Start/End: Original strand, 5810680 - 5810796
Alignment:
| Q |
117 |
tcaagagcattccaattcacttcagaaactcccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatggagtgt |
216 |
Q |
| |
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||||||||||||||||| ||||||||||| | |||||| ||||| ||||||||||| ||||||||||||| | || || |||||||||||| | |
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| T |
5810680 |
tcaagagcattccaatttacttcagaaacctctaatcgactgatggagaatgatccttcggtgagaacttccaactcaacctcagatggagatggataat |
5810779 |
T |
|
| Q |
217 |
attgagggatgttgaaa |
233 |
Q |
| |
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| | ||||||||||||| |
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| T |
5810780 |
agttagggatgttgaaa |
5810796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 20118000 - 20117936
Alignment:
| Q |
148 |
ccaatcgatcgatggtaaatgatccttctttgagaacttccaatttcacttccgatggagatgga |
212 |
Q |
| |
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||||| |||||||| |||||| ||||| | |||||||||||||||||||| | |||||||||| |
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| T |
20118000 |
ccaattgatcgatgacaaatgacccttcagttagaacttccaatttcacttcagttggagatgga |
20117936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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