View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18720_high_8 (Length: 419)

Name: NF18720_high_8
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18720_high_8
NF18720_high_8
[»] chr7 (6 HSPs)
chr7 (11-403)||(17887358-17887765)
chr7 (11-46)||(1767438-1767473)
chr7 (14-46)||(2927939-2927971)
chr7 (11-47)||(10585186-10585222)
chr7 (14-46)||(19154883-19154915)
chr7 (14-46)||(20754282-20754314)
[»] chr2 (3 HSPs)
chr2 (126-225)||(10119083-10119182)
chr2 (14-47)||(29144700-29144733)
chr2 (14-46)||(25537621-25537653)
[»] chr3 (9 HSPs)
chr3 (146-207)||(21362541-21362602)
chr3 (11-48)||(19912642-19912679)
chr3 (11-47)||(16242193-16242229)
chr3 (14-47)||(16228343-16228376)
chr3 (14-47)||(20886933-20886966)
chr3 (14-46)||(7805807-7805839)
chr3 (14-46)||(12517355-12517387)
chr3 (14-46)||(18735301-18735333)
chr3 (11-47)||(19533834-19533870)
[»] chr1 (5 HSPs)
chr1 (11-46)||(26647357-26647392)
chr1 (14-47)||(14782595-14782628)
chr1 (14-47)||(21663089-21663122)
chr1 (14-47)||(26611330-26611363)
chr1 (120-188)||(6471132-6471199)
[»] chr6 (1 HSPs)
chr6 (14-47)||(14076461-14076494)
[»] chr8 (8 HSPs)
chr8 (14-46)||(6286347-6286379)
chr8 (14-46)||(14271906-14271938)
chr8 (14-46)||(19265887-19265919)
chr8 (14-46)||(20400399-20400431)
chr8 (14-46)||(21316848-21316880)
chr8 (14-46)||(25481505-25481537)
chr8 (14-46)||(29380960-29380992)
chr8 (14-46)||(29765391-29765423)
[»] chr5 (1 HSPs)
chr5 (14-46)||(23214825-23214857)
[»] chr4 (2 HSPs)
chr4 (14-46)||(19556541-19556573)
chr4 (14-46)||(25025171-25025203)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 17887765 - 17887358
Alignment:
Q  11 aatatgctaagaataacgtatgatgacctgtcatcaaagtgcaaacacatagaaattttttgnnnnnnnccaacacaattcaagaccccc---------- 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||   |||        |||||||||||||||||||||              
T  17887765 aatatgctaagaataacgtaggatgacctgtcatcaaagtgcaaacacattgaaaaagttttgaaaaaaccaacacaattcaagaccccccccccccccc 17887666  T
Q  101 --gtgtttttctcacctttataagcttgatctagtccaaggttactaggtaaaaggagtctacaacttcttgacttttgatgatcaacaaccctagtctt 198  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  17887665 ctgtgtttttctcacctttataagcttgatctagtccaaggttactaggtaaaaggagtctaaaacttcttgactgttgatgatcaacaaccctagtctt 17887566  T
Q  199 ctacaaaaggcattacctggaacaaatgtgtgcctctaacagtgtctctcctagcttggtgtttgtcgaataacaaattaccaaccaaggataacttggc 298  Q
    |||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  17887565 ctacaaaaggcattacttggaataaatgtgtgcctctaatagtgtctctcctagcttggtgtttgttgaataacagattaccaaccaaggataacttggc 17887466  T
Q  299 tagttgtggaaattttcaagctgactctcttttatgctcttgtggctgtgggatggaggagt---agaataatttgtttttacattgtaatttttatggc 395  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||| ||||||||||||||||| |||||||||||    
T  17887465 ttgttgtggaaattttcaagctgactctcttttatgctcttgtggctgtgggatggaggagtcggataatcatttgtttttacattgtcatttttatggc 17887366  T
Q  396 aatgtttg 403  Q
    ||||||||    
T  17887365 aatgtttg 17887358  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 46
Target Start/End: Original strand, 1767438 - 1767473
Alignment:
Q  11 aatatgctaagaataacgtatgatgacctgtcatca 46  Q
    |||||||||||||||||||| |||||||||||||||    
T  1767438 aatatgctaagaataacgtaagatgacctgtcatca 1767473  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 2927939 - 2927971
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  2927939 atgctaagaataacgtaagatgacctgtcatca 2927971  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 10585222 - 10585186
Alignment:
Q  11 aatatgctaagaataacgtatgatgacctgtcatcaa 47  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  10585222 aatatgctaagaatagcgtaagatgacctgtcatcaa 10585186  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 19154883 - 19154915
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  19154883 atgctaagaataacgtaagatgacctgtcatca 19154915  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 20754282 - 20754314
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  20754282 atgctaagaataacgtaagatgacctgtcatca 20754314  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 10119083 - 10119182
Alignment:
Q  126 gatctagtccaaggttactaggtaaaaggagtctacaacttcttgacttttgatgatcaacaaccctagtcttctacaaaaggcattacctggaacaaat 225  Q
    |||||||| |||||||| |  ||||||||||| ||||| || ||||||||| |||||||| ||||  | ||||||||||||| ||| | |||||||||||    
T  10119083 gatctagttcaaggttattcagtaaaaggagtttacaaattgttgacttttaatgatcaataacctcaatcttctacaaaagacatcatctggaacaaat 10119182  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 29144700 - 29144733
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatcaa 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  29144700 atgctaagaataacgtaagatgacctgtcatcaa 29144733  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 25537621 - 25537653
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  25537621 atgctaagaataacgtaagatgacctgtcatca 25537653  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 207
Target Start/End: Original strand, 21362541 - 21362602
Alignment:
Q  146 ggtaaaaggagtctacaacttcttgacttttgatgatcaacaaccctagtcttctacaaaag 207  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    |||||||||||||    
T  21362541 ggtaaaaggagtctacaacttattaacttttgatgatcaacaacctcgatcttctacaaaag 21362602  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 19912642 - 19912679
Alignment:
Q  11 aatatgctaagaataacgtatgatgacctgtcatcaaa 48  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19912642 aatatgctaagaataacgtaagatgacctgtcatcaaa 19912679  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 16242229 - 16242193
Alignment:
Q  11 aatatgctaagaataacgtatgatgacctgtcatcaa 47  Q
    |||||||||||||||||||| ||||||||||||||||    
T  16242229 aatatgctaagaataacgtaagatgacctgtcatcaa 16242193  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 16228376 - 16228343
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatcaa 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  16228376 atgctaagaataacgtaagatgacctgtcatcaa 16228343  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 20886933 - 20886966
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatcaa 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  20886933 atgctaagaataacgtaagatgacctgtcatcaa 20886966  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 7805807 - 7805839
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  7805807 atgctaagaataacgtaagatgacctgtcatca 7805839  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 12517355 - 12517387
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  12517355 atgctaagaataacgtaagatgacctgtcatca 12517387  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 18735333 - 18735301
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  18735333 atgctaagaataacgtaagatgacctgtcatca 18735301  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 19533834 - 19533870
Alignment:
Q  11 aatatgctaagaataacgtatgatgacctgtcatcaa 47  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  19533834 aatatgctaagaataacgtaagatgatctgtcatcaa 19533870  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 46
Target Start/End: Complemental strand, 26647392 - 26647357
Alignment:
Q  11 aatatgctaagaataacgtatgatgacctgtcatca 46  Q
    |||||||||||||||||||| |||||||||||||||    
T  26647392 aatatgctaagaataacgtaagatgacctgtcatca 26647357  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 14782595 - 14782628
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatcaa 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  14782595 atgctaagaataacgtaagatgacctgtcatcaa 14782628  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 21663122 - 21663089
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatcaa 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  21663122 atgctaagaataacgtaagatgacctgtcatcaa 21663089  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 26611363 - 26611330
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatcaa 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  26611363 atgctaagaataacgtaagatgacctgtcatcaa 26611330  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 6471132 - 6471199
Alignment:
Q  120 aagcttgatctagtccaaggttactaggtaaaaggagtctacaacttcttgacttttgatgatcaacaa 188  Q
    |||||||||||||  |||| ||| | ||||| ||||||||||||| | || ||||||||||||||||||    
T  6471132 aagcttgatctagctcaagattattcggtaagaggagtctacaac-tattaacttttgatgatcaacaa 6471199  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 14076461 - 14076494
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatcaa 47  Q
    ||||||||||||||||| ||||||||||||||||    
T  14076461 atgctaagaataacgtaagatgacctgtcatcaa 14076494  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 6286347 - 6286379
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  6286347 atgctaagaataacgtaagatgacctgtcatca 6286379  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 14271906 - 14271938
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  14271906 atgctaagaataacgtaagatgacctgtcatca 14271938  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 19265887 - 19265919
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  19265887 atgctaagaataacgtaagatgacctgtcatca 19265919  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 20400399 - 20400431
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  20400399 atgctaagaataacgtaagatgacctgtcatca 20400431  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 21316848 - 21316880
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  21316848 atgctaagaataacgtaagatgacctgtcatca 21316880  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 25481537 - 25481505
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  25481537 atgctaagaataacgtaagatgacctgtcatca 25481505  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 29380992 - 29380960
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  29380992 atgctaagaataacgtaagatgacctgtcatca 29380960  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 29765423 - 29765391
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  29765423 atgctaagaataacgtaagatgacctgtcatca 29765391  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 23214857 - 23214825
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  23214857 atgctaagaataacgtaagatgacctgtcatca 23214825  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 19556573 - 19556541
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  19556573 atgctaagaataacgtaagatgacctgtcatca 19556541  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 25025171 - 25025203
Alignment:
Q  14 atgctaagaataacgtatgatgacctgtcatca 46  Q
    ||||||||||||||||| |||||||||||||||    
T  25025171 atgctaagaataacgtaagatgacctgtcatca 25025203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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