View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_high_9 (Length: 399)
Name: NF18720_high_9
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 40114047 - 40114377
Alignment:
| Q |
17 |
actcctcagaaatagcttgtctccaatgggaatatttcatggcttgtcggatattagatggttcaaggttctcaggtaatggatgaacagatgcatggta |
116 |
Q |
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| T |
40114047 |
actcctcagaaatagcttgtctccaatgggaatattttatggcttgtcggatattagatggttcaaggttctcaggtaatggatgaacagatgcatggta |
40114146 |
T |
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| Q |
117 |
aagtttctttggtttgaatatgttgttttgggatctagtaaccacatgattgcgatcattagcacctgcaatggggttaggtagaatcataggtaggttt |
216 |
Q |
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| T |
40114147 |
aagtttctttgttttgaatatgttgttttgggatctagtgaccacatgattgcgatcattagcacctgcaatggggttaggtagaatcataggtaggttt |
40114246 |
T |
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| Q |
217 |
aaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttgaggatttgcaacagatgtagaggtagtggtggtcg |
316 |
Q |
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| T |
40114247 |
gaagtagaagatgtagtgggcagattattacctgatgaagaacttgagtgcaaggttgcctcttgaggatttgcaacagatgtagaggtagtggtggtca |
40114346 |
T |
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| Q |
317 |
cagtttgtgaagtattagttgtaagtggtgg |
347 |
Q |
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| T |
40114347 |
cagtttgtgaagtattagttgtaagtggtgg |
40114377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 655275 - 655327
Alignment:
| Q |
124 |
tttggtttgaatatgttgttttgggatctagtaaccacatgattgcgatcatt |
176 |
Q |
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| T |
655275 |
tttggtttaaagatgttgttttgagatctagtaacaacatgatagcgatcatt |
655327 |
T |
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