View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_low_1 (Length: 590)
Name: NF18720_low_1
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 22016591 - 22016927
Alignment:
| Q |
1 |
acaaggaacctgaggagtgctacgaggataatgaatggaaccagacctaagaaccctgcgtttaccatcaatgcccaatgctctatgatcataggtaaca |
100 |
Q |
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| T |
22016591 |
acaaggaacctgaggagtgctacgaggataatgaatggaaccagacataagaaccctgcgtttaccatcaatgaccaatgctctatgatcataggtaaca |
22016690 |
T |
|
| Q |
101 |
ttggaacaaaaagaagcaggaacataaacaccaagaaaccaaagtaaaacaaaagcaatttgtgtccctctcattatctttttaaggtttaggaacaaac |
200 |
Q |
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| T |
22016691 |
ttggaacaaaaagaagcaggaacataaacaccaagaaaccaaagcaaaacaaaaacaatttgtgtccctctcattatctttttaaggtttaggaacaaac |
22016790 |
T |
|
| Q |
201 |
taaaccgatacaatgaagaaatgattccttctttgttcttggtacttgtatttaaaggccaagttatgtgtttatgacacacttatcttgaagtaaatgc |
300 |
Q |
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| T |
22016791 |
taaaccaatacaatgaag-aatgattccttctttgttcttggtacttgtatttaaaggccaagttatgtgtttatgacacacttatcttgaagtaaatgc |
22016889 |
T |
|
| Q |
301 |
aataacaatgactttgagtttggaatacagttcacaag |
338 |
Q |
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| T |
22016890 |
aataacaatgactttgagtttggaatacagttcacaag |
22016927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 435 - 576
Target Start/End: Original strand, 22017019 - 22017160
Alignment:
| Q |
435 |
cttctatgagaatgcctaagtagttggatttaatatcataagtttgtggtgtcnnnnnnnattatcacatgcgtgtaagtgttggaggttgttgcttaac |
534 |
Q |
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| T |
22017019 |
cttctatgagaatgcctaagtagttggatttaatctcataagtctgtggtgtctttttttattatcacatgcgtgtaagtgttggaggttgttgcttaac |
22017118 |
T |
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| Q |
535 |
cgctttgtgaaaagatagcaatggaattgtagcttcaaattg |
576 |
Q |
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| T |
22017119 |
cgctttgtgaaaagatagcaatggaattgtagcttcaaattg |
22017160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 40084976 - 40084890
Alignment:
| Q |
7 |
aacctgaggagtgctacgaggataatgaatggaaccagacctaagaaccctgcgtttaccatcaatgcccaatgctctatgatcata |
93 |
Q |
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| T |
40084976 |
aacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatgatcata |
40084890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 40059038 - 40058952
Alignment:
| Q |
7 |
aacctgaggagtgctacgaggataatgaatggaaccagacctaagaaccctgcgtttaccatcaatgcccaatgctctatgatcata |
93 |
Q |
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| T |
40059038 |
aacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcata |
40058952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 93
Target Start/End: Complemental strand, 40077052 - 40076966
Alignment:
| Q |
7 |
aacctgaggagtgctacgaggataatgaatggaaccagacctaagaaccctgcgtttaccatcaatgcccaatgctctatgatcata |
93 |
Q |
| |
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| T |
40077052 |
aacctgtggagtactacgagggtagtgaatagaaccagaaatcaagactctacgtttaccatcaatgaccaatgctctatggtcata |
40076966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 40097614 - 40097577
Alignment:
| Q |
8 |
acctgaggagtgctacgaggataatgaatggaaccaga |
45 |
Q |
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| T |
40097614 |
acctgaggagtgctacgaggataatgaattgaaccaga |
40097577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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