View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_low_10 (Length: 393)
Name: NF18720_low_10
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_low_10 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 44109325 - 44109716
Alignment:
| Q |
1 |
ctcaagaaataatttgcctcttcaaagctatatgtctcacaaagttggatgaaagtgatttggatttttgtaataactgtacagaatgcaaaacatcaat |
100 |
Q |
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| T |
44109325 |
ctcaagaaataatttgcctcttcaaagctatatgtctctcaaagttggatgaaagtgatttgaatttttgtaataactgtacagaatgcaaaacatcaat |
44109424 |
T |
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| Q |
101 |
gtggatctgtatcaacatgttatggcatgtttctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgct |
200 |
Q |
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| T |
44109425 |
gtggatctgtatcaacctgttatggcatgtttctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcaaacgct |
44109524 |
T |
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| Q |
201 |
ttgaaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgcgtattgatgcgcaatgttgcctttagttg |
300 |
Q |
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| T |
44109525 |
ttgaaggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatataatgtgtattgatgcgcaatgttgcctttagttg |
44109624 |
T |
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| Q |
301 |
tgtttcccatgcaaatctatttcnnnnnnnnnnnnnnnagtatcctttctatgcaattgatcatctccatctccttcccgagttccacaattt |
393 |
Q |
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| T |
44109625 |
tgtttcccatgcaaatctatttc-tgtttcatttttttaggatcctctctatgcaattgatcatctccatctccttcccgagttccacaattt |
44109716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 132 - 263
Target Start/End: Complemental strand, 40450897 - 40450765
Alignment:
| Q |
132 |
tctccttattcagttgtgctattgagtggacttgcaagtgtcaagtctctcgcactatcagcgaacgctttgaaggtatgtattatcttttatctgatca |
231 |
Q |
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| T |
40450897 |
tctccttattcggttgtgctactgagtggacttgcaagtgtcaagtctcttacactatcaaaggacacttttagggtatgtattaccttttctctcatca |
40450798 |
T |
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| Q |
232 |
tcatcattt-atctttttaaatattgtgtataa |
263 |
Q |
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| T |
40450797 |
tcttcatttaatctttttaaatattgtgtataa |
40450765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 321
Target Start/End: Original strand, 40276437 - 40276557
Alignment:
| Q |
206 |
ggtatgtattatcttttatctgatcatcatcatttatctttttaaatattgtgtataatata-----atgcgtattgatgcgcaatgttgcctttagttg |
300 |
Q |
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| T |
40276437 |
ggtatgtattgtcttttttctgaacatcttcatttatctttttaaatattgtgtataatataataagatgcgtattgacgcacaatgttgcctttggctg |
40276536 |
T |
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| Q |
301 |
tgtttcccatgcaaatctatt |
321 |
Q |
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| T |
40276537 |
tgtttcccatgcaagtctatt |
40276557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 43760251 - 43760320
Alignment:
| Q |
18 |
ctcttcaaagctatatgtctcacaaagttggatgaaagtgatttggatttttgtaataactgtacagaat |
87 |
Q |
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| T |
43760251 |
ctcttcaaagctatctgcctctcaaagtttgatgaaagtgatttgaatttttgtaataactgaacagaat |
43760320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 393
Target Start/End: Complemental strand, 40450710 - 40450665
Alignment:
| Q |
348 |
tctatgcaattgatcatctccatctccttcccgagttccacaattt |
393 |
Q |
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| T |
40450710 |
tctatgtaattgatcatctccatctccttcctgagttccacaattt |
40450665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 40276579 - 40276628
Alignment:
| Q |
344 |
cctttctatgcaattgatcatctccatctccttcccgagttccacaattt |
393 |
Q |
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| T |
40276579 |
cctctctatgtaattgatcatctccatccccttcctgagctccacaattt |
40276628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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