View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18720_low_11 (Length: 384)

Name: NF18720_low_11
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18720_low_11
NF18720_low_11
[»] chr4 (4 HSPs)
chr4 (1-376)||(40458604-40458980)
chr4 (1-243)||(68975-69217)
chr4 (269-376)||(69218-69325)
chr4 (301-364)||(10276270-10276333)
[»] chr1 (10 HSPs)
chr1 (1-364)||(43407943-43408308)
chr1 (1-376)||(37667325-37667699)
chr1 (1-364)||(337737-338122)
chr1 (290-376)||(21264765-21264851)
chr1 (302-376)||(6835953-6836027)
chr1 (327-376)||(36386882-36386931)
chr1 (301-376)||(24275570-24275645)
chr1 (301-376)||(8421574-8421648)
chr1 (301-376)||(26317178-26317252)
chr1 (300-375)||(35762228-35762303)
[»] chr7 (8 HSPs)
chr7 (1-336)||(22077332-22077668)
chr7 (301-376)||(9993291-9993366)
chr7 (301-376)||(12196741-12196816)
chr7 (304-375)||(11036652-11036723)
chr7 (290-364)||(10289367-10289441)
chr7 (302-375)||(15874113-15874186)
chr7 (299-376)||(49170452-49170528)
chr7 (323-364)||(41874370-41874411)
[»] chr2 (9 HSPs)
chr2 (1-364)||(40447110-40447495)
chr2 (317-364)||(44788531-44788578)
chr2 (299-376)||(32735467-32735544)
chr2 (301-364)||(23828310-23828373)
chr2 (299-376)||(1193597-1193673)
chr2 (301-376)||(18292894-18292968)
chr2 (301-364)||(41340830-41340892)
chr2 (302-360)||(11387177-11387235)
chr2 (320-376)||(29270654-29270710)
[»] chr8 (7 HSPs)
chr8 (290-376)||(22816514-22816600)
chr8 (303-376)||(40841580-40841652)
chr8 (310-364)||(10250399-10250453)
chr8 (299-376)||(35839099-35839176)
chr8 (300-376)||(44436064-44436138)
chr8 (300-364)||(20265011-20265075)
chr8 (300-364)||(21051640-21051704)
[»] chr5 (4 HSPs)
chr5 (301-376)||(27026621-27026696)
chr5 (303-376)||(6308625-6308698)
chr5 (301-376)||(38000845-38000920)
chr5 (302-376)||(536731-536805)
[»] chr3 (7 HSPs)
chr3 (301-376)||(9104174-9104249)
chr3 (312-376)||(17542840-17542904)
chr3 (290-364)||(7337270-7337344)
chr3 (301-376)||(5004895-5004970)
chr3 (303-360)||(16971984-16972041)
chr3 (299-364)||(43278423-43278487)
chr3 (300-376)||(46404737-46404814)
[»] scaffold0120 (1 HSPs)
scaffold0120 (301-364)||(2657-2720)
[»] scaffold0013 (1 HSPs)
scaffold0013 (290-376)||(243199-243285)
[»] chr6 (5 HSPs)
chr6 (300-376)||(23260753-23260829)
chr6 (301-364)||(11166599-11166662)
chr6 (302-376)||(34636188-34636262)
chr6 (290-336)||(10751640-10751686)
chr6 (301-376)||(32450438-32450512)
[»] scaffold0069 (1 HSPs)
scaffold0069 (301-364)||(10885-10948)
[»] scaffold0413 (1 HSPs)
scaffold0413 (299-336)||(8838-8875)
[»] scaffold0002 (1 HSPs)
scaffold0002 (301-364)||(356896-356959)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 40458604 - 40458980
Alignment:
Q  1 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgcttcgtggatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40458604 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgtttcgtggatctt 40458703  T
Q  101 actttcgtttccccttaacatgctgctgtggaattgtgaccgagcattcattcaccgttcgatcgagttaaattttagacaacatttcccaacatgtggt 200  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  40458704 actttcgtttccccttaacatgtttctgtggaattgtgaccgagcattcattcaccgttcaatcgagttaaattttagacaacttttcccaacatgtggt 40458803  T
Q  201 tattcgttgtcaacggagtctagagcgagagaaatcgtgcatgttttgaaactgcaaaattagaggaccttgtcgtcgttttattggga--gaaagctaa 298  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| | | |||   ||||||      
T  40458804 tattcgttttcaacggagtctagagcgagagaaatcgtgcatgctttgaacctgcaaaattagaggaccttgtagtcgtttgactaggaagaaaagctct 40458903  T
Q  299 cgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||||||||||||| | ||||||||| || |||||||||||||| ||| |||| | |||||||||    
T  40458904 cgaggtaagggctttttccccatacgtccatactaagtgcta-gactgtgttattaagtagaggtagcaattcttgtc 40458980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 68975 - 69217
Alignment:
Q  1 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgcttcgtggatctt 100  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||    
T  68975 tcacaaaattcgtgtatgtcctaaggtactccatgtcctattttttagtttaattttattctccaatctctaatcatgaaattactgtttcgtggaactt 69074  T
Q  101 actttcgtttccccttaacatgctgctgtggaattgtgaccgagcattcattcaccgttcgatcgagttaaattttagacaacatttcccaacatgtggt 200  Q
    ||||||||||||||| |||||| || |||||||||||| |||||||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||    
T  69075 actttcgtttcccctgaacatgttgttgtggaattgtggccgagcattcattcacagttccatcgggttaaattttagaaaacatttcccaacatgtggt 69174  T
Q  201 tattcgttgtcaacggagtctagagcgagagaaatcgtgcatg 243  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  69175 tattcgttttcaacggagtctagagcgagagaaatcgtgcatg 69217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 269 - 376
Target Start/End: Original strand, 69218 - 69325
Alignment:
Q  269 cttgtcgtcgttttattgggag-aaagctaacgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacg 367  Q
    ||||| ||||||| ||||| || |||||| |||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||| |     
T  69218 cttgtagtcgtttgattggaaggaaagcttacgaggtaagggttttttccc-atacgtccatactaagtgttaggactgtgttattaaatagtggtagca 69316  T
Q  368 attcttgtc 376  Q
    |||||||||    
T  69317 attcttgtc 69325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 10276270 - 10276333
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    |||||||||||||||   |||||||||||||||||||||||||| ||||||  ||||| |||||    
T  10276270 aggtaagggctttttgatcatacgttcttactaagtgttaggacagtgttaagaaataatggta 10276333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 43408308 - 43407943
Alignment:
Q  1 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgcttcgtggatctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43408308 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgtttcgtggatctt 43408209  T
Q  101 actttcgtttccccttaacatgctgctgtggaattgtgaccgagcattcattcaccgttcgatcgagttaaattttagacaacatttcccaacatgtggt 200  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||    
T  43408208 actttcgtttccccttaacatgtttatgtggaattgtgaccgagcattcattcaccgttcaatcgagttaaattttagacaactttacccaacatgtggt 43408109  T
Q  201 tattcgttgtcaacggagtctagagcgagagaaatcgtgcatgttttgaaactgcaaaattagaggaccttgtcgtcgttttattggga--gaaagctaa 298  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||| | | |||   ||||||      
T  43408108 tattcgttttcaacggagtctagagcgagagaaatcgtgcatgctttgaacctgcaaaattagaggaccttgtagtcgtttgactaggaagaaaagctct 43408009  T
Q  299 cgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||| || |||||    
T  43408008 cgaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggta 43407943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 37667699 - 37667325
Alignment:
Q  1 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgcttcgtggatctt 100  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  37667699 tcacaaaattcgtgtatgtcctaaggtactccatgttctattttctagtttaattttattctccaatctctaatcatgaaattattgtttcgtggaactt 37667600  T
Q  101 actttcgtttccccttaacatgctgctgtggaattgtgaccgagcattcattcaccgttcgatcgagttaaattttagacaacatttcccaacatgtggt 200  Q
    |||||||||| |||| |||||| || |||||||||||||| |||||||||||||||||||||| | ||||||||||||| || |||||||||||||||||    
T  37667599 actttcgttttccctgaacatgttgttgtggaattgtgactgagcattcattcaccgttcgattgggttaaattttagaaaatatttcccaacatgtggt 37667500  T
Q  201 tattcgttgtcaacggagtctagagcgagagaaatcgtgcatgttttgaaactgcaaaattagaggaccttgtcgtcgttttattggga-gaaagctaac 299  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||| |||||||||||||| || |||| ||||||| ||||||| |     
T  37667499 tattcgtt-tcaacggagtccagagcgagagaaatcgtgcatgctttgaacctgcaaatttagaggaccttgtagttgtttgattgggaggaaagcttat 37667401  T
Q  300 gaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||| |||||||||||||||||||||||||||||  ||||| | |||||| || ||| ||||  ||||||||||    
T  37667400 gaggtaa-ggctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtc 37667325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 337737 - 338122
Alignment:
Q  1 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgcttcgtggatctt 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  337737 tcacaaaattcgtgtatgtcctaatgtactccatgtcctattttctagtttaattttattctccaatctctaatcatgaaattattgtttcgtggaactt 337836  T
Q  101 actttcgtttccccttaacatgctgctg-tggaattgtgaccgagcattcattca--------------------ccgttcgatcgagttaaattttag- 178  Q
    ||||| ||||||||| |||||| || || ||||||| ||||||||||||||||||                    ||||||||||| ||||||||||||     
T  337837 acttttgtttcccctgaacatgttgttggtggaattatgaccgagcattcattcatatgaccgagcattcattcaccgttcgatcgggttaaattttagg 337936  T
Q  179 acaacatttcccaacatgtggttattcgttgtcaacggagtctagagcgagagaaatcgtgcatgttttgaaactgcaaaattagaggaccttgtcgtcg 278  Q
    | ||||||| ||||| ||||||||||| || ||||||||||||||||||||| |||| || |||| |||||| ||||||| |||||||||||||| ||||    
T  337937 aaaacattttccaacttgtggttattctttttcaacggagtctagagcgagataaattgtccatgctttgaacctgcaaatttagaggaccttgtagtcg 338036  T
Q  279 ttttattggga-gaaagctaacgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||| ||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||| || |||| ||||||||| ||| ||||    
T  338037 tttgattgggaggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggta 338122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 21264851 - 21264765
Alignment:
Q  290 gaaagctaacgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||| || |||| | |||||||||    
T  21264851 gaaagcttacgaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtc 21264765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 6835953 - 6836027
Alignment:
Q  302 ggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||||||||||||||||||||||| |||| || | | ||||||||| |||| | |||||||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtc 6836027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 327 - 376
Target Start/End: Complemental strand, 36386931 - 36386882
Alignment:
Q  327 cttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  36386931 cttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtc 36386882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 24275570 - 24275645
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||| | |||||||||| |||||| ||||||  |||||| ||||||||||||  |||||||||    
T  24275570 aggtaagggctttttcctcgtacgttcttattaagtgctaggaccttgttatgaaatagtggtaaaaattcttgtc 24275645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 8421574 - 8421648
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||||||||||| | ||||||||| |||| |||||||||||| |||  ||| | |||||||||    
T  8421574 aggtaagggctttttccccatacgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtc 8421648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 26317178 - 26317252
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||||| | |||| | || |||||| |||| ||||| ||||||||||||||| | |||||||||    
T  26317178 aggtaagggctttttcccaa-acgtccataataagtgctagggctgtggtattaaatagtggtagcaattcttgtc 26317252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 35762303 - 35762228
Alignment:
Q  300 gaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgt 375  Q
    |||||||||||||||||||||||||| | ||||||||  ||||| | |||||| || ||| ||||  |||||||||    
T  35762303 gaggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgt 35762228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 22077332 - 22077668
Alignment:
Q  1 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgcttcgtggatctt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  22077332 tcacaaaattcgtgtatgtcctaaggtactccatgtcctattttctagtttaattttattctccaatctctaatcatgaaattattgtttcgtggaactt 22077431  T
Q  101 actttcgtttccccttaacatgctgctgtggaattgtgaccgagcattcattcaccgttcgatcgagttaaattttagacaacatttcccaacatgtggt 200  Q
    ||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  22077432 acttttgtttcccctgaacatgttgttgtggaattgtgaccgagcattcattcaccgttcgatcgggttaaattttagaaaacatttcccaacatgtggt 22077531  T
Q  201 tattcgttgtcaacggagtctagagcgagagaaatcgtgcatgttttgaaactgcaaaattagaggaccttgtcgtcgttttattggga-gaaagctaac 299  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||| ||||||| ||||||| |     
T  22077532 tattcgttttcaacggagtctagagcgagagaaatcgtgcatgctttgaacctgcaaatttagaggaccttgtagtcgtttgattgggaggaaagcttat 22077631  T
Q  300 gaggtaagggctttttccccatacgttcttactaagt 336  Q
    |||||||||||||||| |||||| |||| ||||||||    
T  22077632 gaggtaagggcttttttcccatatgttcatactaagt 22077668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 9993291 - 9993366
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||||||| |||||||||||||||| |||| || ||||||||||||| |||||| |||||||||    
T  9993291 aggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtc 9993366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 12196816 - 12196741
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||||||||| |||||||||||||  |||||| |||||||||||||||||| | |||||||||    
T  12196816 aggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtc 12196741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 375
Target Start/End: Complemental strand, 11036723 - 11036652
Alignment:
Q  304 taagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgt 375  Q
    ||||||||||||||||| |||||||||||||||| |||| || ||||||||||||| |||||| ||||||||    
T  11036723 taagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgt 11036652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 10289441 - 10289367
Alignment:
Q  290 gaaagctaacgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||| || |||||    
T  10289441 gaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggta 10289367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 15874186 - 15874113
Alignment:
Q  302 ggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgt 375  Q
    |||||||||||||||||||||||||||||||||||  ||||| | |||||| || ||| ||||  |||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgt 15874113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 49170528 - 49170452
Alignment:
Q  299 cgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||| ||||||||||||||| | |||||||||||| | |||||||||||| |||  ||| | |||||||||    
T  49170528 cgaggtaagggttttttccccatacgtccatactaagtgttacg-ctgtgttattaagtagaagtagcaattcttgtc 49170452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 364
Target Start/End: Original strand, 41874370 - 41874411
Alignment:
Q  323 cgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    |||||||||||||||||||||  ||||||| |||||||||||    
T  41874370 cgttcttactaagtgttaggatcgtgttatgaaatagtggta 41874411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 4e-91; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 40447110 - 40447495
Alignment:
Q  1 tcacaaaattcgtgtatgtcctaaggtactccatgtcctactttctagtttaattttattctccaatctctaatcatgaaattattgcttcgtggatctt 100  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  40447110 tcacaaaattcgtgtatgtcctaatgtactccatgtcctattttctagtttaattttattctccaatctctaatcatgaaattattgtttcgtggaactt 40447209  T
Q  101 actttcgtttccccttaacatgctgctg-tggaattgtgaccgagcattcattca--------------------ccgttcgatcgagttaaattttag- 178  Q
    ||||| ||||||||| |||||| || || ||||||| ||||||||||||||||||                    ||||||||||| ||||||||||||     
T  40447210 acttttgtttcccctgaacatgttgttggtggaattatgaccgagcattcattcatatgaccgagcattcattcaccgttcgatcgggttaaattttagg 40447309  T
Q  179 acaacatttcccaacatgtggttattcgttgtcaacggagtctagagcgagagaaatcgtgcatgttttgaaactgcaaaattagaggaccttgtcgtcg 278  Q
    | ||||||| ||||| ||||||||||| || ||||||||||||||||||||| |||| || |||| |||||| ||||||| |||||||||||||| ||||    
T  40447310 aaaacattttccaacttgtggttattctttttcaacggagtctagagcgagataaattgtccatgctttgaacctgcaaatttagaggaccttgtagtcg 40447409  T
Q  279 ttttattggga-gaaagctaacgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||| ||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||| || |||| ||||||||| ||| ||||    
T  40447410 tttgattgggaggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggta 40447495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 44788531 - 44788578
Alignment:
Q  317 cccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44788531 cccatacgttcttactaagtgttaggactgtgttattaaatagtggta 44788578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 376
Target Start/End: Complemental strand, 32735544 - 32735467
Alignment:
Q  299 cgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| | |||||| || ||| ||||  ||||||||||    
T  32735544 cgaggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtc 32735467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 23828373 - 23828310
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||||||||  ||||| |||| |||||||||||||||||||||||| |||||| |||||||||||    
T  23828373 aggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggta 23828310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 1193597 - 1193673
Alignment:
Q  299 cgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||||||| ||| |||||||||||||| ||| ||| |||||||||| || |||| | |||||||||    
T  1193597 cgaggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtc 1193673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 18292968 - 18292894
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||| ||||| ||||||||| | ||||||||| |||| |||||||||||| ||| |||| | |||||||||    
T  18292968 aggtaagggtttttttcccatacgtccatactaagtgctagg-ctgtgttattaagtagaggtagcaattcttgtc 18292894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 41340892 - 41340830
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    |||||||||||||||||| |||||| | |||||||||||||   ||||| ||||||||||||||    
T  41340892 aggtaagggctttttccc-atacgtccatactaagtgttagagatgtgtcattaaatagtggta 41340830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 360
Target Start/End: Original strand, 11387177 - 11387235
Alignment:
Q  302 ggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagt 360  Q
    |||||| | ||||| |||||||||||||||||| | ||||||| ||||||| |||||||    
T  11387177 ggtaagagtttttttcccatacgttcttactaaatattaggaccgtgttatgaaatagt 11387235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 29270654 - 29270710
Alignment:
Q  320 atacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||| | ||||||||||||||  |||| ||||||||||||||| | |||||||||    
T  29270654 atacgtccatactaagtgttagggttgtgctattaaatagtggtagcaattcttgtc 29270710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 22816600 - 22816514
Alignment:
Q  290 gaaagctaacgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  | |||||||||    
T  22816600 gaaagctctcgaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtc 22816514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 40841652 - 40841580
Alignment:
Q  303 gtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  40841652 gtaagggctttttccc-atacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtc 40841580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 364
Target Start/End: Original strand, 10250399 - 10250453
Alignment:
Q  310 ctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    |||||||| ||||||||||||||||||||| |||| ||||| | |||||||||||    
T  10250399 ctttttccgcatacgttcttactaagtgttgggaccgtgttttaaaatagtggta 10250453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 376
Target Start/End: Original strand, 35839099 - 35839176
Alignment:
Q  299 cgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||| |||| ||||||||||||||  || |||||||||| |||| || |||||||||| |  |||||| |||||||||    
T  35839099 cgagctaagagctttttccccataaattattactaagtgatagggctttgttattaaacacgggtaacaattcttgtc 35839176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 376
Target Start/End: Original strand, 44436064 - 44436138
Alignment:
Q  300 gaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||||  ||||||   ||||||||| || |  |||||||||||||||||||| | |||||||||    
T  44436064 gaggtaagggctttttcc--atacgtcaatactaagtgctaaggatgtgttattaaatagtggtagcaattcttgtc 44436138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 20265075 - 20265011
Alignment:
Q  300 gaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    |||||||||| |||||||| ||||||||||| |||||| |||||  ||||| | || ||||||||    
T  20265075 gaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggta 20265011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 21051704 - 21051640
Alignment:
Q  300 gaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    |||||||||| |||||||| ||||||||||| |||||| |||||  ||||| | || ||||||||    
T  21051704 gaggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggta 21051640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 27026621 - 27026696
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||    
T  27026621 aggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtc 27026696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 376
Target Start/End: Original strand, 6308625 - 6308698
Alignment:
Q  303 gtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||||| | |||||||||    
T  6308625 gtaagggcttttttcccataggttcttattaaatgttaggactgtgttattaaatagtggtagcaattcttgtc 6308698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 38000845 - 38000920
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||| ||||||||||||||| | ||||||||| |||  ||||||||||||||| ||||| | |||||||||    
T  38000845 aggtaagggttttttccccatacgtccatactaagtgctagagctgtgttattaaataatggtagcaattcttgtc 38000920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 536731 - 536805
Alignment:
Q  302 ggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||||||||||||||||||||||  ||||| | |||||| || ||| ||||  ||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 536805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 376
Target Start/End: Original strand, 9104174 - 9104249
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  9104174 aggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtc 9104249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 312 - 376
Target Start/End: Complemental strand, 17542904 - 17542840
Alignment:
Q  312 ttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtc 17542840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 7337344 - 7337270
Alignment:
Q  290 gaaagctaacgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||| || |||||    
T  7337344 gaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctaggactgtgtcattaagtaatggta 7337270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 5004970 - 5004895
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||||||||||||||||||||||  ||||| | |||||| || ||| ||||  ||||||||||    
T  5004970 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 5004895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 16971984 - 16972041
Alignment:
Q  303 gtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagt 360  Q
    ||||||||||||| ||| || ||||||||||||||||||||| ||||||| |||||||    
T  16971984 gtaagggcttttttcccgtatgttcttactaagtgttaggacggtgttatgaaatagt 16972041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 364
Target Start/End: Complemental strand, 43278487 - 43278423
Alignment:
Q  299 cgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    |||||||||||||||||| | |||||| | || ||||||||||| |||||| ||||||||||||||    
T  43278487 cgaggtaagggctttttctc-atacgtccatattaagtgttagggctgtgtcattaaatagtggta 43278423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 46404814 - 46404737
Alignment:
Q  300 gaggtaagggcttttt-ccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||| |||||||||||||||||||||  ||||| | |||||| || ||| ||||  ||||||||||    
T  46404814 gaggtaagggcttttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 46404737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 2720 - 2657
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  2720 aggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggta 2657  T

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Target: scaffold0013 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 376
Target Start/End: Complemental strand, 243285 - 243199
Alignment:
Q  290 gaaagctaacgaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||  |||||||| ||| |||||||||||| |||||||||||||||||| || ||||||||||||| |||| | |||||||||    
T  243285 gaaagctttcgaggtaatggcgttttccccatacattcttactaagtgttagggctttgttattaaataggggtatcaattcttgtc 243199  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 300 - 376
Target Start/End: Complemental strand, 23260829 - 23260753
Alignment:
Q  300 gaggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    ||||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||| ||||  ||||||||||    
T  23260829 gaggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtc 23260753  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 11166662 - 11166599
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    |||||||||||||||||||||||||||||||||||||||||||   | |||| |||||||||||    
T  11166662 aggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggta 11166599  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 302 - 376
Target Start/End: Original strand, 34636188 - 34636262
Alignment:
Q  302 ggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||||||||||||||||||||||||  ||||| | |||||| || ||| ||||  ||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 34636262  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 10751686 - 10751640
Alignment:
Q  290 gaaagctaacgaggtaagggctttttccccatacgttcttactaagt 336  Q
    ||||||| ||||||||||||| |||||||||||| ||||||||||||    
T  10751686 gaaagcttacgaggtaagggccttttccccatacattcttactaagt 10751640  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 301 - 376
Target Start/End: Complemental strand, 32450512 - 32450438
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggtaacgattcttgtc 376  Q
    |||||||||||||| |||| ||||||||||||||||  ||||| |||||||| || ||| ||||  ||||||||||    
T  32450512 aggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtc 32450438  T

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Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 10885 - 10948
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||||||||  ||||||||||||||||||||||||||||||| ||| | |||| |||||||||||    
T  10885 aggtaaggattttttccccatacgttcttactaagtgttagaactttattatgaaatagtggta 10948  T

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Target: scaffold0413 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 8838 - 8875
Alignment:
Q  299 cgaggtaagggctttttccccatacgttcttactaagt 336  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8838 cgaggtaagggctttttccccatacgttcttactaagt 8875  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 356959 - 356896
Alignment:
Q  301 aggtaagggctttttccccatacgttcttactaagtgttaggactgtgttattaaatagtggta 364  Q
    ||||||||  ||||||||||||||||||||||||||| |||||| ||||| | || ||||||||    
T  356959 aggtaaggattttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggta 356896  T

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