View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_low_12 (Length: 353)
Name: NF18720_low_12
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 47198779 - 47198946
Alignment:
| Q |
1 |
tgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttacattgaaataagtgagtt---agaagta |
97 |
Q |
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| T |
47198779 |
tgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttacattgaaataagtgagttagaagaagta |
47198878 |
T |
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| Q |
98 |
ttactttgcaatc-tttaaattagaaaaggatctttagtggattataatagatccttgccatttagctt |
165 |
Q |
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| T |
47198879 |
ttac-ttgcaatcttttaaattagaaaaggatctttagtagattataatagatccttgccatttagctt |
47198946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 195 - 337
Target Start/End: Original strand, 47198939 - 47199081
Alignment:
| Q |
195 |
tttagtttaagcatttatcttttacgctcataattattttcattacattcagtgattgtacttcttcaattattataaatgaaatatttcatttggaatt |
294 |
Q |
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| T |
47198939 |
tttagcttaaccatttatcttttacgctcataattattttcattacattcagttattgtacttcttccattattataaatgaaatatttcatttggaatt |
47199038 |
T |
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| Q |
295 |
cttcatttgagatccacttttgtaacttttaggagaggtattt |
337 |
Q |
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| T |
47199039 |
cttcatttgagatccacttttgtaacttttaggagaggtattt |
47199081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 47186240 - 47186309
Alignment:
| Q |
1 |
tgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagt |
70 |
Q |
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| T |
47186240 |
tgaagatatggctgagaaagtatggaaacaacattggttctggaagaggtttatgcattgaatttaaagt |
47186309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 748423 - 748369
Alignment:
| Q |
1 |
tgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatg |
55 |
Q |
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|||||| ||| | |||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
748423 |
tgaagaaatgaccgagagagtatggaaacaacattggttctggaagaggtttatg |
748369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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