View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_low_13 (Length: 352)
Name: NF18720_low_13
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 30986416 - 30986752
Alignment:
| Q |
1 |
agtaaagacaaaatgtagtctcagaaaagtaacataaaacatccaaacttacgtgaaaattattggaacgatactcacaccggcagtgatcagacgcaca |
100 |
Q |
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| T |
30986416 |
agtaaagacaaaatgtagtctcagaaaagtaatataaaacatccaaacttacgtgaaaattattggaacgatactcacaccggcagtgatcagacgcaca |
30986515 |
T |
|
| Q |
101 |
agctcagtattactagggttgttttgaccatcaccatatggaacaaacttataggggacagcataaggtaacaagtttactgcagaaagaaatacatcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30986516 |
agctcagtattactagggttgttttgaccatcaccatatggaacaaacttataggggacagcataaggtaacaagtttactgcagaaagaaatacatcaa |
30986615 |
T |
|
| Q |
201 |
tgcagaatcccttgaacgtgtcagtggattgtacctgagaaacaaattcacggtaactagtccttctaggtactcctatttttaatagctttccattgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30986616 |
tgcagaatcccttgaacgtgtcagtggattgtacctgagaaacaaattcacggtaactagtccttctaggtactccgatttttaatagctttccattgtt |
30986715 |
T |
|
| Q |
301 |
cggaaaaacccaaccgcgtggtctctgggttgtttct |
337 |
Q |
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| T |
30986716 |
cggaaaaacccaaccgcgtggtctctgggttgtttct |
30986752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 70 - 315
Target Start/End: Complemental strand, 9802426 - 9802181
Alignment:
| Q |
70 |
gatactcacaccggcagtgatcagacgcacaagctcagtattactagggttgttttgaccatcaccatatggaacaaacttataggggacagcataaggt |
169 |
Q |
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|||||||||||| | || ||| |||| ||||||||||| |||||||| ||||| | |||||| |||||||||| ||||||||| |||||||||||||| |
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| T |
9802426 |
gatactcacaccagttgttatccgacggacaagctcagtgttactaggattgttcttaccatccccatatggaataaacttataagggacagcataaggc |
9802327 |
T |
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| Q |
170 |
aacaagtttactgcagaaagaaatacatcaatgcagaatcccttgaacgtgtcagtggattgtacctgagaaacaaattcacggtaactagtccttctag |
269 |
Q |
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|| | ||| | |||||||||||||||||||||||||||||| | || || || ||| | |||| || || ||||||| ||||||||| | | | | |
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| T |
9802326 |
aataggttaattgcagaaagaaatacatcaatgcagaatccttgaaatgtatcggtgcctggtacttgcgagacaaattggcggtaactaacgcctattg |
9802227 |
T |
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| Q |
270 |
gtactcctatttttaatagctttccattgttcggaaaaacccaacc |
315 |
Q |
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||||||| ||| |||||||| |||||||||| |||||||||||||| |
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| T |
9802226 |
gtactccaattcttaatagccttccattgtttggaaaaacccaacc |
9802181 |
T |
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