View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_low_3 (Length: 534)
Name: NF18720_low_3
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 42233531 - 42234038
Alignment:
| Q |
18 |
caaaaatcagctctcgaaaaaagaaacaaatatatttagtggagagatgaatatgtgatatgagattcaattgagttaccaatgagatctacactttagg |
117 |
Q |
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| T |
42233531 |
caaaaatcagctctcgaaaaaagaaacaaatatatttagtggagagatgaatatgtgctatgagattcaattgagttaccaatgagatctacattttagg |
42233630 |
T |
|
| Q |
118 |
ctaacatcggttattaaggaaagaataaataacgaaagagaagaatgattatggtccgttgattttacatccacccatgaccgcataatttccattaaac |
217 |
Q |
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| T |
42233631 |
ctaacgtcgattattaaggaaagaataaataacgaaagagaagaatgattatggtccgttgattttacatccacccatgaccgcataatttccattaaac |
42233730 |
T |
|
| Q |
218 |
atcaaaattagagttttgagttctttagaatgttccacatatgtattcttgcctttagtgtctcaaatccttagtagcatttagcatcactctaaacttt |
317 |
Q |
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| T |
42233731 |
atcaagattagagttttgagttctttagaatgttccacatatgtattcttgcctttcgtgtctcaaatccttagtagcatttagcatcactctaaacttt |
42233830 |
T |
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| Q |
318 |
aggtacaagggtaaatcaactaactaagacgaataacaaacttactnnnnnnnnnnnnnnnnctaactttatgacatctgtcacaactattgtggcacga |
417 |
Q |
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| T |
42233831 |
aggcacaagggtaaatcaactaactaagacgaataacaaacttact---aaaaaaaaaaaaactaactttgtgacatctgtcacaactattgtggcacga |
42233927 |
T |
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| Q |
418 |
tttgggtgtggaagattggtttggctcataaaaaatcatggcgcgatttcatgcaatcatggcgcaattgtagacaatggtacaataatacaatgtacgg |
517 |
Q |
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| T |
42233928 |
tttgggtgtagaagattggcttggctcataaaaaatcacggcgcgatttcatgcaatcatggcgcaattgtagacaatggtacaataatacaatgtacgg |
42234027 |
T |
|
| Q |
518 |
tttcatctcac |
528 |
Q |
| |
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|||||| |||| |
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| T |
42234028 |
tttcatatcac |
42234038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 309
Target Start/End: Complemental strand, 35767235 - 35767072
Alignment:
| Q |
143 |
taaataacgaaagagaagaatgattatggtccgttgattttacatccacccatgaccgcataatttccattaaacatcaaaattagagttttgagttctt |
242 |
Q |
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|||||||| |||||||||||||| |||||| |||||||| ||||| |||||| |||||| |||||| | |||| | | |||| || |||||| ||| |
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| T |
35767235 |
taaataacaaaagagaagaatgactatggttcgttgattatacattcaccca---ccgcatgatttccgtgaaacgtggagattacagagttgagtcctt |
35767139 |
T |
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| Q |
243 |
tagaatgttccacatatgtattcttgcctttagtgtctcaaatccttagtagcatttagcatcactc |
309 |
Q |
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| T |
35767138 |
tagaatgttccacatgtgcattcttgtctttcgtgtctcaattctttcgtaacatttagcatcactc |
35767072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 36784403 - 36784355
Alignment:
| Q |
146 |
ataacgaaagagaagaatgattatggtccgttgattttacatccaccca |
194 |
Q |
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| T |
36784403 |
ataacgaaagagaagaatgattacggtccattgattttaaatccaccca |
36784355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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