View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18720_low_6 (Length: 485)
Name: NF18720_low_6
Description: NF18720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18720_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 108 - 322
Target Start/End: Complemental strand, 47382394 - 47382179
Alignment:
| Q |
108 |
taatataaccgcatattctcatacaaaaattccaataagtattggtgtgtgtacccatctgagcatgaggtgtgagacgaagaactcacctcaaacggtg |
207 |
Q |
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| T |
47382394 |
taatataaccgcatattctcatacaaaaatcccaataagcattggtgtgtgtacccatttgagcatgaggtgtgagacgaggaactcacctcaaacggtg |
47382295 |
T |
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| Q |
208 |
gacgaacgaacgataaaaaagaaagaaattgactcactcaagtgatttcttttccatattaaagaa-aaaatgaacactatgatagtgttgttggatatg |
306 |
Q |
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| T |
47382294 |
gacgaacgaacgataaaaaagaaagaaattgactcactcaagtgatttcttttccatattaaagaaaaaaatgaacactatgatagtgttgttggatatg |
47382195 |
T |
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| Q |
307 |
catccaacatctaatc |
322 |
Q |
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| T |
47382194 |
catccaacatctaatc |
47382179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 47383706 - 47383607
Alignment:
| Q |
10 |
attattctaccttatgatttactattctatattgtgatattctatcgagtatttttacttcagagagaatggagagaagaaaggaactactcctcacata |
109 |
Q |
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| T |
47383706 |
attattctgccttatgatttactattctatattgtgatattctatcgagtatttttacttgagagagaatggagagaagaaacgaactactcatcacata |
47383607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 380 - 467
Target Start/End: Complemental strand, 47382121 - 47382035
Alignment:
| Q |
380 |
caatgcaaaatatcattccataacaatactttaattattattattaaagaatatctatttatttgaaggataccgcaacatcttcagg |
467 |
Q |
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| T |
47382121 |
caatgcaaaatatcattccataacaatactttaattattattattaaagaatatctattta-ttgaaggataccgcaacatcttcagg |
47382035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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