View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18721_high_10 (Length: 314)

Name: NF18721_high_10
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18721_high_10
NF18721_high_10
[»] chr7 (1 HSPs)
chr7 (16-305)||(45615820-45616112)


Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 45615820 - 45616112
Alignment:
Q  16 tgttcaactcttttatgcatatacaatgtcttcacaaatgccataattatttatggtgatataaaagaacccgtggctactctttatttatgccgctctg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  45615820 tgttcaactcttttatgcatatacaatgtcttcacaaatgccataattatttatggtcatataaaagaacctgtggctactctttatttatgccgctctg 45615919  T
Q  116 gaatttggactaatagaa--gattataaatcataagtagggtccatctaagaatatagctaggttcaaagtaggatactagcttgcccttttagaaatag 213  Q
    |||||||||||||||| |  ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45615920 gaatttggactaatagcacagattataagccataagtagggtccatctaagaatatagctaggttcaaagtaggataccagcttgcccttttagaaatag 45616019  T
Q  214 aattttggaaaagaaatcattagagaaaatgggtggttaagacatcagtcaaaaataagata-ttaaatcatagactaaacaataagaataat 305  Q
    |||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  45616020 aatttttgaaaagaaatcattagagaaaatggttggttaagtcatcagtcaaaaataagatacttaaatcatagactaaacattaagagtaat 45616112  T

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