View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18721_high_15 (Length: 241)
Name: NF18721_high_15
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18721_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 5509106 - 5509330
Alignment:
| Q |
17 |
atgtgaaacaagtgaagacattgcaacatcttcatctcacagtgagtttcctttagctgtttctttgaacaatgaagaccttaacatggtctctagcaac |
116 |
Q |
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| T |
5509106 |
atgtgaaacaagtgaagacattgcaacatcttcatctcacagtgagtttcctttagctgtttctttgaacaatgaagaccttaacatggtctctagcaac |
5509205 |
T |
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| Q |
117 |
attttatcagctgaaacttggcttaggttaaacattttcccatattacccttcatcaaaaatcaccaacattgttgggaaaacctcaactttctgccaac |
216 |
Q |
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| T |
5509206 |
attttatcagctgaaacttggcttaggttaaacattttcccatattacccttcatcaaaaatcaccaacattgttgggaaaacctcaactttctgccaac |
5509305 |
T |
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| Q |
217 |
aagaccaaaacaaccttaatgttgt |
241 |
Q |
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| T |
5509306 |
aagaccaaaacaaccttaatgttgt |
5509330 |
T |
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Back To:
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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 20444686 - 20444810
Alignment:
| Q |
92 |
agaccttaacatggtctctagcaacattttatcagctgaaacttggcttaggttaaacattttcccatattacccttcatcaaaaatcaccaacattgtt |
191 |
Q |
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| T |
20444686 |
agaccgtaacaaggtctctagcaacattttatcagctgaaacttggcttaggttaaacattttctcata-----------aaaaaaaaaccaagattgtt |
20444774 |
T |
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| Q |
192 |
gggaaaacctcaactttctgccaacaagaccaaaac |
227 |
Q |
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| T |
20444775 |
ggaaaaacctcaactttctgccaacaagaccaaaac |
20444810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 226
Target Start/End: Original strand, 20432576 - 20432607
Alignment:
| Q |
195 |
aaaacctcaactttctgccaacaagaccaaaa |
226 |
Q |
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| T |
20432576 |
aaaacctcaactttctgccaacaagaccaaaa |
20432607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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