View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18721_low_10 (Length: 352)

Name: NF18721_low_10
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18721_low_10
NF18721_low_10
[»] chr8 (12 HSPs)
chr8 (263-307)||(34799536-34799580)
chr8 (263-307)||(6115564-6115608)
chr8 (263-307)||(9796775-9796819)
chr8 (263-307)||(15255902-15255946)
chr8 (266-306)||(42035824-42035864)
chr8 (263-306)||(28254880-28254923)
chr8 (266-306)||(7911070-7911110)
chr8 (263-307)||(16578157-16578201)
chr8 (267-307)||(18050044-18050084)
chr8 (266-306)||(35693920-35693960)
chr8 (267-307)||(41260714-41260754)
chr8 (267-307)||(42036225-42036265)
[»] chr7 (13 HSPs)
chr7 (263-307)||(39388721-39388765)
chr7 (266-307)||(2758151-2758192)
chr7 (261-306)||(5334273-5334318)
chr7 (263-307)||(7732537-7732581)
chr7 (263-307)||(25637246-25637290)
chr7 (267-307)||(26026370-26026410)
chr7 (263-307)||(26048399-26048443)
chr7 (263-307)||(35161255-35161299)
chr7 (263-304)||(787242-787283)
chr7 (267-307)||(5333933-5333973)
chr7 (267-307)||(9181865-9181905)
chr7 (263-307)||(14311740-14311784)
chr7 (267-307)||(28687952-28687992)
[»] chr4 (12 HSPs)
chr4 (263-307)||(26974698-26974742)
chr4 (263-307)||(34789836-34789880)
chr4 (263-307)||(55677411-55677455)
chr4 (263-307)||(33689878-33689922)
chr4 (263-307)||(45838596-45838640)
chr4 (263-307)||(46737108-46737152)
chr4 (267-306)||(12593477-12593516)
chr4 (264-307)||(24851919-24851962)
chr4 (264-307)||(28465131-28465174)
chr4 (263-304)||(54440620-54440661)
chr4 (263-307)||(19528918-19528962)
chr4 (263-307)||(35193357-35193401)
[»] chr3 (17 HSPs)
chr3 (263-307)||(40275547-40275591)
chr3 (263-307)||(16689407-16689451)
chr3 (263-307)||(40275142-40275186)
chr3 (263-307)||(43678737-43678781)
chr3 (267-307)||(47431749-47431789)
chr3 (263-307)||(52375784-52375828)
chr3 (267-307)||(2044324-2044364)
chr3 (263-307)||(14654248-14654292)
chr3 (263-307)||(32730438-32730482)
chr3 (263-307)||(34105103-34105147)
chr3 (267-307)||(40838705-40838745)
chr3 (267-307)||(40839105-40839145)
chr3 (263-307)||(51828006-51828050)
chr3 (267-307)||(51828592-51828632)
chr3 (267-307)||(52236869-52236909)
chr3 (263-307)||(52237270-52237314)
chr3 (263-307)||(55389654-55389698)
[»] chr2 (14 HSPs)
chr2 (263-307)||(11540091-11540135)
chr2 (264-307)||(4808929-4808972)
chr2 (263-307)||(649576-649620)
chr2 (263-307)||(15550722-15550766)
chr2 (263-307)||(38007999-38008043)
chr2 (263-307)||(42192289-42192333)
chr2 (263-306)||(43216163-43216206)
chr2 (267-307)||(4355808-4355848)
chr2 (267-307)||(16175803-16175843)
chr2 (263-307)||(16953387-16953431)
chr2 (263-307)||(20128190-20128234)
chr2 (266-306)||(32418600-32418640)
chr2 (267-307)||(33920665-33920705)
chr2 (263-303)||(42192700-42192740)
[»] chr6 (3 HSPs)
chr6 (267-307)||(31073595-31073635)
chr6 (264-307)||(5120922-5120965)
chr6 (260-307)||(31574178-31574225)
[»] chr1 (15 HSPs)
chr1 (263-307)||(30786821-30786865)
chr1 (263-307)||(44582106-44582150)
chr1 (267-307)||(50304492-50304532)
chr1 (264-307)||(10278598-10278641)
chr1 (263-306)||(52335964-52336007)
chr1 (270-307)||(1837561-1837598)
chr1 (270-307)||(2867967-2868004)
chr1 (266-307)||(34555431-34555472)
chr1 (266-307)||(45048207-45048248)
chr1 (263-307)||(2868161-2868205)
chr1 (267-307)||(8230094-8230134)
chr1 (267-307)||(16298735-16298775)
chr1 (263-303)||(29438979-29439019)
chr1 (267-307)||(37421213-37421253)
chr1 (263-307)||(39485114-39485158)
[»] chr5 (5 HSPs)
chr5 (263-306)||(15115546-15115589)
chr5 (267-307)||(4967224-4967264)
chr5 (263-307)||(18150177-18150221)
chr5 (263-307)||(21371149-21371193)
chr5 (263-307)||(32697679-32697723)


Alignment Details
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 34799580 - 34799536
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  34799580 gtcctacctcttttaaatcgaacaaaattgtccctaaactatatg 34799536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 6115608 - 6115564
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  6115608 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 6115564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 9796775 - 9796819
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||||  || ||||||||||||    
T  9796775 gtcctacctcttttaaatcgaacaaaatcatccataaactatatg 9796819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 15255902 - 15255946
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  15255902 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 15255946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 42035824 - 42035864
Alignment:
Q  266 ctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  42035824 ctacctcttttaaatcgaacaaaatcgtccataaactatat 42035864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 28254923 - 28254880
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    |||||||||||||||||||||||||||| |||  ||||||||||    
T  28254923 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatat 28254880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 7911110 - 7911070
Alignment:
Q  266 ctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  7911110 ctacctcttttaaatcgaacaaaatcgtccctaaactatat 7911070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 16578157 - 16578201
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||| ||||||    
T  16578157 gtcctacctcttttaaatcgaacaaaatcgtccctaaattatatg 16578201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 18050084 - 18050044
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  18050084 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 18050044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Original strand, 35693920 - 35693960
Alignment:
Q  266 ctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    ||||||||||||||||||| ||||| ||| |||||||||||    
T  35693920 ctacctcttttaaatcgaataaaatcgtccataaactatat 35693960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 41260754 - 41260714
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  41260754 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 41260714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 42036265 - 42036225
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  42036265 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 42036225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 39388765 - 39388721
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||| |||||||||||    
T  39388765 gtcctacctcttttaaatcgaacaaaatcgtctctaaactatatg 39388721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 2758192 - 2758151
Alignment:
Q  266 ctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||| ||| ||||||||||||    
T  2758192 ctacctcttttaaatcgaacaaaatcgtccataaactatatg 2758151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 306
Target Start/End: Complemental strand, 5334318 - 5334273
Alignment:
Q  261 tagtcctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    |||||||||||||||||||||||||||||| |||  ||||||||||    
T  5334318 tagtcctacctcttttaaatcgaacaaaatcgtccctaaactatat 5334273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 7732537 - 7732581
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  7732537 gtcctacctcttttaaatcgaacaaaatcgtccttaaactatatg 7732581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 25637246 - 25637290
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  25637246 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 25637290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 26026370 - 26026410
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  26026370 tacctcttttaaatcgaacaaaatcgtccataaactatatg 26026410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 26048443 - 26048399
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||    
T  26048443 gtcctacctcttttaaatcaaacaaaattgtccttaaactatatg 26048399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 35161299 - 35161255
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  35161299 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 35161255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 787283 - 787242
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactat 304  Q
    |||||||||||||||||||||||||||| |||  ||||||||    
T  787283 gtcctacctcttttaaatcgaacaaaatcgtccctaaactat 787242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 5333933 - 5333973
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  5333933 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 5333973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 9181905 - 9181865
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  9181905 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 9181865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 14311784 - 14311740
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||| || |||||||||||||||||| |||| |||||||||||    
T  14311784 gtcctatcttttttaaatcgaacaaaatcgtctttaaactatatg 14311740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 28687992 - 28687952
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  28687992 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 28687952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 26974742 - 26974698
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  26974742 gtcctacctcttttaaatcgaacaaaattgtccctaaactatatg 26974698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 34789880 - 34789836
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||||||||  |||||||||||    
T  34789880 gtcctacctcttttaaatcgaacaaaattgtccctaaactatatg 34789836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 55677455 - 55677411
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||| |||||||||||    
T  55677455 gtcctacctcttttaaatcgaacaaaatcgtctctaaactatatg 55677411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 33689878 - 33689922
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  33689878 gtcctacctcttttaaatcgaacaaaatcgtccttaaactatatg 33689922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 45838596 - 45838640
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  45838596 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 45838640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 46737152 - 46737108
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  46737152 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 46737108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 306
Target Start/End: Complemental strand, 12593516 - 12593477
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  12593516 tacctcttttaaatcgaacaaaatcgtctgtaaactatat 12593477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 24851962 - 24851919
Alignment:
Q  264 tcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||| |||  |||||||||||    
T  24851962 tcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 24851919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 28465131 - 28465174
Alignment:
Q  264 tcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||| |||  |||||||||||    
T  28465131 tcctacctcttttaaatcgaacaaaatcgtccttaaactatatg 28465174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 54440620 - 54440661
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactat 304  Q
    |||||||||||||||||||||||||||| |||  ||||||||    
T  54440620 gtcctacctcttttaaatcgaacaaaatcgtccctaaactat 54440661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 19528918 - 19528962
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||| ||||| |||  |||||||||||    
T  19528918 gtcctacctcttttaaatcgaataaaatcgtccctaaactatatg 19528962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 35193357 - 35193401
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||| |||||||||||||| |||  |||||||||||    
T  35193357 gtcctacctctttcaaatcgaacaaaatcgtccctaaactatatg 35193401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 40275591 - 40275547
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||| |||||||||||    
T  40275591 gtcctacctcttttaaatcgaacaaaatcgtctctaaactatatg 40275547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 16689407 - 16689451
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||    
T  16689407 gtcctacctcttttaaatcgaacaaaatcgtccataaaatatatg 16689451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 40275142 - 40275186
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||||||||  |||||| ||||    
T  40275142 gtcctacctcttttaaatcgaacaaaattgtccctaaactctatg 40275186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 43678781 - 43678737
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||||    
T  43678781 gtccaacctcttttaaatcgaacaaaatcgtccataaactatatg 43678737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 47431749 - 47431789
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  47431749 tacctcttttaaatcgaacaaaatcgtctttaaactatatg 47431789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 52375828 - 52375784
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||    
T  52375828 gtcctacctcttttaaattgaacaaaatcgtccataaactatatg 52375784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 2044324 - 2044364
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| ||| ||||| ||||||    
T  2044324 tacctcttttaaatcgaacaaaatcgtccataaattatatg 2044364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 14654248 - 14654292
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||| || |||||||||||||||||| |||| |||||||||||    
T  14654248 gtcctatcttttttaaatcgaacaaaatcgtctttaaactatatg 14654292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 32730438 - 32730482
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||| ||||||||| |||  |||||||||||    
T  32730438 gtcctacctcttttaaattgaacaaaatcgtccctaaactatatg 32730482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 34105147 - 34105103
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||| |||||||||||||||||||||| |||  |||||||||||    
T  34105147 gtcctccctcttttaaatcgaacaaaatcgtccctaaactatatg 34105103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 40838705 - 40838745
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||| |||||||| ||| ||||||||||||    
T  40838705 tacctcttttaaatcaaacaaaatcgtccataaactatatg 40838745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 40839145 - 40839105
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  40839145 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 40839105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 51828006 - 51828050
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||| ||||||||||||||||||||| |||  |||||||||||    
T  51828006 gtcctagctcttttaaatcgaacaaaatcgtccctaaactatatg 51828050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 51828592 - 51828632
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  51828592 tacctcttttaaatcgaacaaaatcgtccgtaaactatatg 51828632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 52236869 - 52236909
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  52236869 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 52236909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 52237314 - 52237270
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||| ||||||    
T  52237314 gtcctacctcttttaaatcgaacaaaatcgtccctaaattatatg 52237270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 55389654 - 55389698
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||| |||||||||||||||||| |||  |||||||||||    
T  55389654 gtcctaccttttttaaatcgaacaaaatcgtccttaaactatatg 55389698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 11540135 - 11540091
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||    
T  11540135 gtcctacctcttttaaatcgaacaaaatcgtccataaactatatg 11540091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 4808929 - 4808972
Alignment:
Q  264 tcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||    
T  4808929 tcctacctcttttaaatcgaacaaaatcgtccataaactatatg 4808972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 649576 - 649620
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  649576 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 649620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 15550722 - 15550766
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  15550722 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 15550766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 38007999 - 38008043
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  38007999 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 38008043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 42192289 - 42192333
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  42192289 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 42192333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 43216206 - 43216163
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    |||||||||||||||||||||||||||| |||  ||||||||||    
T  43216206 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatat 43216163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 4355808 - 4355848
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  4355808 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 4355848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 16175843 - 16175803
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  16175843 tacctcttttaaatcgaacaaaatcgtccttaaactatatg 16175803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 16953431 - 16953387
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||| ||||  |||| ||||||    
T  16953431 gtcctacctcttttaaatcgaacaaaaatgtccctaaagtatatg 16953387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 20128234 - 20128190
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||| |||||||| |||  |||||||||||    
T  20128234 gtcctacctcttttaaatcaaacaaaatcgtccttaaactatatg 20128190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 306
Target Start/End: Complemental strand, 32418640 - 32418600
Alignment:
Q  266 ctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  32418640 ctacctcttttaaatcgaacaaaatcgtccttaaactatat 32418600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 33920665 - 33920705
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  33920665 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 33920705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 42192740 - 42192700
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaacta 303  Q
    |||||||||||||||||||||||||||| |||  |||||||    
T  42192740 gtcctacctcttttaaatcgaacaaaatcgtccctaaacta 42192700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 31073635 - 31073595
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  31073635 tacctcttttaaatcgaacaaaattgtccctaaactatatg 31073595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Complemental strand, 5120965 - 5120922
Alignment:
Q  264 tcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||| |||  |||||||||||    
T  5120965 tcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 5120922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 307
Target Start/End: Complemental strand, 31574225 - 31574178
Alignment:
Q  260 ttagtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||| |||||||||||||||||||||||| |||  |||||||||||    
T  31574225 ttagtcatacctcttttaaatcgaacaaaatcgtccctaaactatatg 31574178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 30786821 - 30786865
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  |||||||||||    
T  30786821 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 30786865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 44582106 - 44582150
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||    
T  44582106 gtcctacctcttttaaatcgaacaaaatcgtctctaaattatatg 44582150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 50304492 - 50304532
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  50304492 tacctcttttaaatcgaacaaaatcgtctctaaactatatg 50304532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 307
Target Start/End: Original strand, 10278598 - 10278641
Alignment:
Q  264 tcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||| |||  |||||||||||    
T  10278598 tcctacctcttttaaatcgaacaaaatcgtccctaaactatatg 10278641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 52336007 - 52335964
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    |||||||||||||||||||||||||||| |||  ||||||||||    
T  52336007 gtcctacctcttttaaatcgaacaaaatcgtccctaaactatat 52335964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 1837561 - 1837598
Alignment:
Q  270 ctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||  |||||||||||    
T  1837561 ctcttttaaatcgaacaaaattgtccctaaactatatg 1837598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 2867967 - 2868004
Alignment:
Q  270 ctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||  |||||||||||    
T  2867967 ctcttttaaatcgaacaaaattgtcgttaaactatatg 2868004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 34555431 - 34555472
Alignment:
Q  266 ctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||| |||  |||||||||||    
T  34555431 ctacctcttttaaatcgaacaaaatcgtccctaaactatatg 34555472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 45048207 - 45048248
Alignment:
Q  266 ctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||    
T  45048207 ctacctcttttaaattgaacaaaatcgtccataaactatatg 45048248  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 2868205 - 2868161
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||||||| |||  || ||||||||    
T  2868205 gtcctacctcttttaaatcgaacaaaatcgtccctacactatatg 2868161  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 8230134 - 8230094
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  8230134 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 8230094  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 16298735 - 16298775
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  16298735 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 16298775  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 29438979 - 29439019
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaacta 303  Q
    |||||||||||||||||||||||||||| |||  |||||||    
T  29438979 gtcctacctcttttaaatcgaacaaaatcgtccctaaacta 29439019  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 37421213 - 37421253
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  37421213 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 37421253  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 39485114 - 39485158
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||| |||||||||||||| |||  |||||||||||    
T  39485114 gtcctacctctttcaaatcgaacaaaatcgtccctaaactatatg 39485158  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 306
Target Start/End: Complemental strand, 15115589 - 15115546
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatat 306  Q
    |||||||||||||||||||||||||||| |||  ||||||||||    
T  15115589 gtcctacctcttttaaatcgaacaaaatcgtccttaaactatat 15115546  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 4967264 - 4967224
Alignment:
Q  267 tacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| |||  |||||||||||    
T  4967264 tacctcttttaaatcgaacaaaatcgtccctaaactatatg 4967224  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 18150221 - 18150177
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||||||||||||  ||  |||||||||||    
T  18150221 gtcctacctcttttaaatcgaacaaaatcatccctaaactatatg 18150177  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 21371193 - 21371149
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    ||||||||||||||||||| |||||||| |||  |||||||||||    
T  21371193 gtcctacctcttttaaatcaaacaaaatcgtccctaaactatatg 21371149  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 32697723 - 32697679
Alignment:
Q  263 gtcctacctcttttaaatcgaacaaaattgtctataaactatatg 307  Q
    |||||||||||||||||||||||| ||| |||  |||||||||||    
T  32697723 gtcctacctcttttaaatcgaacagaatcgtccctaaactatatg 32697679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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