View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18721_low_12 (Length: 296)

Name: NF18721_low_12
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18721_low_12
NF18721_low_12
[»] chr6 (7 HSPs)
chr6 (16-296)||(33312476-33312756)
chr6 (16-296)||(16723-17001)
chr6 (16-296)||(3548387-3548667)
chr6 (16-165)||(18308296-18308445)
chr6 (16-296)||(12434117-12434376)
chr6 (22-296)||(13734576-13734850)
chr6 (94-293)||(11777056-11777254)
[»] chr5 (7 HSPs)
chr5 (16-296)||(35339983-35340263)
chr5 (16-296)||(13644420-13644700)
chr5 (21-230)||(21899654-21899863)
chr5 (55-296)||(11722395-11722636)
chr5 (53-293)||(19070207-19070447)
chr5 (52-293)||(5782724-5782965)
chr5 (55-167)||(17763307-17763419)
[»] chr2 (8 HSPs)
chr2 (16-296)||(3867921-3868201)
chr2 (16-294)||(25976565-25976843)
chr2 (21-293)||(5114851-5115123)
chr2 (16-294)||(20380809-20381087)
chr2 (76-173)||(12101128-12101225)
chr2 (63-147)||(15702099-15702183)
chr2 (83-151)||(15717405-15717473)
chr2 (63-143)||(21152369-21152449)
[»] scaffold0238 (1 HSPs)
scaffold0238 (16-296)||(1442-1722)
[»] chr4 (13 HSPs)
chr4 (16-296)||(17939152-17939432)
chr4 (16-296)||(15443048-15443328)
chr4 (16-235)||(39915291-39915510)
chr4 (16-235)||(7188223-7188442)
chr4 (22-293)||(33042130-33042401)
chr4 (22-293)||(8668594-8668865)
chr4 (22-296)||(10674671-10674945)
chr4 (22-296)||(10888311-10888585)
chr4 (31-296)||(1930191-1930456)
chr4 (114-296)||(10697303-10697485)
chr4 (114-296)||(10911072-10911254)
chr4 (22-118)||(10693630-10693726)
chr4 (22-118)||(10907396-10907492)
[»] chr3 (7 HSPs)
chr3 (16-292)||(3582199-3582475)
chr3 (23-291)||(16313173-16313442)
chr3 (23-291)||(18494167-18494436)
chr3 (16-151)||(20971911-20972041)
chr3 (16-151)||(14679761-14679896)
chr3 (186-296)||(20972039-20972149)
chr3 (52-173)||(19829761-19829882)
[»] chr1 (7 HSPs)
chr1 (16-294)||(30730557-30730835)
chr1 (21-168)||(21805374-21805521)
chr1 (73-293)||(13311104-13311324)
chr1 (22-206)||(10425361-10425545)
chr1 (52-233)||(11780944-11781125)
chr1 (25-173)||(1625597-1625745)
chr1 (162-296)||(21797294-21797428)
[»] chr8 (6 HSPs)
chr8 (22-296)||(21591270-21591544)
chr8 (22-296)||(14411447-14411721)
chr8 (35-296)||(23600025-23600286)
chr8 (16-80)||(4207537-4207601)
chr8 (83-147)||(18694077-18694141)
chr8 (54-140)||(17458714-17458800)
[»] scaffold0363 (1 HSPs)
scaffold0363 (22-296)||(6990-7264)
[»] scaffold0292 (1 HSPs)
scaffold0292 (21-248)||(19364-19591)
[»] scaffold0416 (1 HSPs)
scaffold0416 (19-293)||(9107-9381)
[»] chr7 (2 HSPs)
chr7 (16-294)||(20942362-20942640)
chr7 (24-296)||(3729248-3729520)
[»] scaffold0061 (1 HSPs)
scaffold0061 (48-294)||(37933-38179)
[»] scaffold0017 (1 HSPs)
scaffold0017 (48-294)||(160600-160846)
[»] scaffold0012 (1 HSPs)
scaffold0012 (19-296)||(61288-61565)
[»] scaffold0281 (1 HSPs)
scaffold0281 (16-284)||(5534-5802)
[»] scaffold0093 (1 HSPs)
scaffold0093 (19-151)||(10378-10510)
[»] scaffold0490 (1 HSPs)
scaffold0490 (16-240)||(11992-12216)
[»] scaffold0125 (2 HSPs)
scaffold0125 (16-151)||(31360-31495)
scaffold0125 (16-151)||(40671-40806)
[»] scaffold0062 (3 HSPs)
scaffold0062 (63-147)||(51011-51095)
scaffold0062 (63-147)||(63550-63634)
scaffold0062 (83-151)||(65963-66031)
[»] scaffold0063 (2 HSPs)
scaffold0063 (135-257)||(59505-59627)
scaffold0063 (22-101)||(59635-59714)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 33312756 - 33312476
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33312756 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacggcacttgcaatttccttcaaggttctctcccgcc 33312657  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33312656 aatactcttgtggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 33312557  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33312556 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 33312476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 16723 - 17001
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgta-ccaacgacacttgcaatttccttcaaggttctctcccgc 114  Q
    |||| |||||||||||||||  |||||||| ||||| ||||||||||||||||||| ||  |||||  ||||||||||||||||||||    ||||||||    
T  16723 atgcaagcataatgaccaaaaatacgatttttagttagtccatcaatatcaataggtgtttccaaccgcacttgcaatttccttcaag----tctcccgc 16818  T
Q  115 caatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctca 214  Q
    ||||| ||||||||||  || |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  16819 caatattcttgcggtagttctaccaaacgtatccaaagtgatacatgagtctgtttctgcgtctgaaatttaaagtctttggtccattgtgaaaatctca 16918  T
Q  215 acaaaccaggcttgagatttatcgtgtctgctgcccatattttcttt-aaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    ||||||||||||| ||||||| |||  || ||||||||||||| ||| || ||||||||||||||||| ||||||||||||||    
T  16919 acaaaccaggcttaagatttaccgtccctactgcccatattttttttgaagtcctccgccgagtcaaagtgaaagtcataata 17001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 3548387 - 3548667
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||| || || |||||  |||||||||||||||||||||| ||||||||||    
T  3548387 atgcgagcataatgaccaaaagtacgatttctagttggtccattaatatcaattggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgcc 3548486  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||| ||||||||  || |||||||||||||||| ||| |||||||| ||||| |||||| ||||||||||||| || ||| ||||||||||||||||    
T  3548487 aatacttttgcggtagttctaccaaacgtatccaaagtgatacatgagtttgtttatgcgccagaaatttaaagtccttggtctattgtgaaaatctcaa 3548586  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    ||||||||| || ||||||| | |  || |||||||| |||| | ||| | || ||||||||| || ||||||||||||||    
T  3548587 caaaccaggattaagatttaccatccctactgcccattttttttataagttcttcgccgagtcgaagtgaaagtcataata 3548667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 18308296 - 18308445
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||    
T  18308296 atgcaagcataatgaccaaaggtacgatttctagttggtccatcaatatcaatgggtgtaccaacggcacttgcaatttccttcaaggttctctcccacc 18308395  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtc 165  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18308396 aatactcttgcggtaactccaccaaacgtatccaaatcgagacatgagtc 18308445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 12434376 - 12434117
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||  |||||||||||||||||| || ||||| ||||  ||||||||  ||||||||| |||| |||||||||| |||||||    
T  12434376 atgcgagcataatgaccaaagaaacgatttctagttggtccgtcgatatctatagtagtaccaactgcacttgcaaattccatcaaggttctttcccgcc 12434277  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||| |||||| |||| |||||||||||| |||||||  ||  |||||||||                     ||||| | ||||||||||||||||| ||    
T  12434276 aatgctcttgtggtagctccaccaaacgaatccaaagcgaagcatgagtct---------------------agtctctggtccattgtgaaaatctgaa 12434198  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12434197 caaaccaggcttgagatttatcgtgcatgctacccatattttctttaaatcctccgctgagtcaaaatgaaagtcataata 12434117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 13734850 - 13734576
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||||||||||  || ||||||||||| ||||| |  ||||  |   ||||||| |||||||||||  ||||||| |||||||| |    
T  13734850 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgtcaatcgctgtacttatcgcacttgctatttccttcaaaattctctctcgccaatatt 13734751  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | || |||| ||||||||| || ||||||| ||| ||||||||||||||||| ||  || |||| |||||||| | |||||||||||| |  || |||||    
T  13734750 cctgtggtacctccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaagtctttcgcccattgtgaaaaccgtaataaacc 13734651  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    ||||| |||  | | ||||  |||||||||||||||  | |  || |||| ||||||||| ||||||||||||||    
T  13734650 aggctcgaggctcaccgtgcgtgctgcccatatttttctaaggtcatccgtcgagtcaaagtgaaagtcataata 13734576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 293
Target Start/End: Original strand, 11777056 - 11777254
Alignment:
Q  94 tccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctt 193  Q
    ||||||||||||||||||||||||||||||||||||||||| |  |||   |||||||  || ||||| ||||| || || |   |  |||| || ||||    
T  11777056 tccttcaaggttctctcccgccaatactcttgcggtaactcaataaaaaaaatccaaagcgatacatgtgtctg-ttatgagaaaggtatttgaaatctt 11777154  T
Q  194 tagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcata 293  Q
    | ||||| || || |||||||||||||| ||||||||||| || ||  ||||||||||||||||   || ||| ||||||| |||||| |||||||||||    
T  11777155 tggtccactgcgataatctcaacaaacccggcttgagattgattgtacctgctgcccatatttttcgtagatcatccgccgtgtcaaagtgaaagtcata 11777254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 35340263 - 35339983
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  35340263 atgcgagcataatgaccaaagatacgatttctagttggtccatcaatatcaataggtgtaccaacggcacttgcaatttccttcaaggttctctcccgcc 35340164  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35340163 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 35340064  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||||||| ||||| | |||  || ||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  35340063 caaaccaggctttagattaaccgttcctactgcccatattttctttaaatcctccgccgattcgaaatgaaagtcataata 35339983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 13644420 - 13644700
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||| |||||||||||||||||| || |||   ||||| ||||||||  |||||||||||||| ||||||||||||||||||    
T  13644420 atgcgagcataatgaccaaaggaacgatttctagttggtccgtcgataaatataggagtaccaactgcacttgcaatttccatcaaggttctctcccgcc 13644519  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| |||| ||| |||||||| |||||||  ||  |||||||||||||||||| |  || |||||||||||| ||||||||||||||||||||    
T  13644520 aatactcttgtggtagctctaccaaacgaatccaaagcgaagcatgagtctgtttctgcgtcaaaattttaaagtctttggtccattgtgaaaatctcaa 13644619  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    ||||||||||||||||||||  ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13644620 caaaccaggcttgagatttactgtgcctactacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 13644700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 21899654 - 21899863
Alignment:
Q  21 agcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatac 120  Q
    ||||||||| ||||| ||||| |||| ||||||||||||||||||||| || || |||||  |||| ||||||||||||||  ||||||||| |||||||    
T  21899654 agcataatgcccaaaagtacggtttcgagttggtccatcaatatcaattggagtcccaaccgcactagcaatttccttcaacattctctccctccaatac 21899753  T
Q  121 tcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaac 220  Q
    ||||| |||| ||| |||||||||||||||| ||| ||||| ||||| ||||||| |||| |||| || ||||||||||| || || ||||  | |||||    
T  21899754 tcttgtggtagctcgaccaaacgtatccaaagtgatacatgtgtctgcttctgcgtctgatatttgaaatctttagtccactgagagaatcgtagcaaac 21899853  T
Q  221 caggcttgag 230  Q
    | ||||||||    
T  21899854 ccggcttgag 21899863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 296
Target Start/End: Complemental strand, 11722636 - 11722395
Alignment:
Q  55 ccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattg 154  Q
    |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||| |||||||||||||||||||| || ||||||| ||    
T  11722636 ccatcaatgtcaattggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaatattcttgcggtaactccaccaatcgaatccaaagtg 11722537  T
Q  155 agacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatat 254  Q
    | |||||||||||||| || ||  || |||| |||||||| ||||||||||||||    |||||||| | |||||| || | |||| |||||||||||||    
T  11722536 aaacatgagtctgtttttgagcaagatatttgaagtctttggtccattgtgaaaactgtaacaaacccgacttgaggttcaccgtgcctgctgcccatat 11722437  T
Q  255 tttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    | |  | |  || | |||||||||||| ||||| ||||||||    
T  11722436 tcttctaaggtcatgcgccgagtcaaagtgaaaatcataata 11722395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 293
Target Start/End: Original strand, 19070207 - 19070447
Alignment:
Q  53 gtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaat 152  Q
    |||||||||| ||||| || || |||||  | ||||| || |||||||| |||||||||||||||||||||||| ||||||| ||||| || |||||||     
T  19070207 gtccatcaatgtcaatcggggtgccaaccgcgcttgcgatctccttcaaagttctctcccgccaatactcttgcagtaactcaaccaagcgaatccaaag 19070306  T
Q  153 tgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccat 252  Q
     || ||||| ||||||||||| |   |  |||| || ||||| ||||| || || ||||| || ||||| |||||||| || |  ||  |||||||||||    
T  19070307 agatacatgtgtctgtttctgagaaaggtatttgaaatctttggtccactgcgataatcttaataaacccggcttgaggttgactgtacctgctgcccat 19070406  T
Q  253 attttctttaaatcctccgccgagtcaaaatgaaagtcata 293  Q
    ||||||  || ||| |||||||||||||| |||||||||||    
T  19070407 attttccgtagatcatccgccgagtcaaagtgaaagtcata 19070447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 293
Target Start/End: Original strand, 5782724 - 5782965
Alignment:
Q  52 ggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||| ||||| ||  | |||||  | ||||| || |||||||| ||||||||||||||||| || ||||||||||| || || |  |||||||    
T  5782724 ggtccatcaatgtcaattggattgccaaccgcgcttgcgatctccttcaaagttctctcccgccaatattcctgcggtaactcaactaagcaaatccaaa 5782823  T
Q  152 ttgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgccca 251  Q
      || ||||| |||||||||||     |  |||| || ||||| ||||| || || |||||||||||||| |||||||| || |  ||  ||||||||||    
T  5782824 gagatacatgtgtctgtttctgataaaggtatttgaaatctttggtccactgcgataatctcaacaaacccggcttgaggttgactgtacctgctgccca 5782923  T
Q  252 tattttctttaaatcctccgccgagtcaaaatgaaagtcata 293  Q
    |||||||  || ||| ||| |||||||||| |||||||||||    
T  5782924 tattttccgtagatcatccaccgagtcaaagtgaaagtcata 5782965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 17763419 - 17763307
Alignment:
Q  55 ccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattg 154  Q
    |||||||| || ||||| || ||||| |  ||||||||||||||||| |||||||||| | ||||||| ||||||||||| ||||| || ||||||| ||    
T  17763419 ccatcaatgtcgataggggttccaaccatgcttgcaatttccttcaatgttctctcccactaatactcctgcggtaactcaaccaagcgaatccaaagtg 17763320  T
Q  155 agacatgagtctg 167  Q
    | ||||| |||||    
T  17763319 aaacatgtgtctg 17763307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 8e-98; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 3868201 - 3867921
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||| |||||||| |    
T  3868201 atgcgagcataatgaccaaaagtacgatttctagttggtccatcaatatcaataggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgtc 3868102  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||| ||||| ||||  || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3868101 aatattcttgtggtagttctaccaaacgtatccaaagtgatacatgagtctgtttctgcgcctgaaatttaaagtccttagtccattgtgaaaatctcaa 3868002  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||||||| |||||||  ||  || ||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||    
T  3868001 caaaccaggcttaagatttactgtccctactgcccatattttttttaagtcctccgccgagtaaaagtgaaagtcataata 3867921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 25976565 - 25976843
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || ||| |||| || ||||||||||||||||  |||||||    
T  25976565 atgcgagcataatgcccaaaggtacggtttctagttggcccatcaatgtcaataggcgtgcccacggcactagctatttccttcaaggttcgttcccgcc 25976664  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||||||||| || |||||||  || |||||||| ||||| ||| ||  || |||||||||||| |||||||| || || |  ||    
T  25976665 aatactcttgcggtaactccaccaagcgaatccaaagcgaaacatgagtttgtttttgcaccaaaagtttaaagtctttggtccattgagagaaccgtaa 25976764  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataa 294  Q
     || |||||||| || || || ||| ||||||||||||| |||| |||||| ||| |||||||||| ||||| ||||||    
T  25976765 taatccaggcttaaggttcattgtgcctgctgcccatatcttctgtaaatcgtccaccgagtcaaagtgaaaatcataa 25976843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 293
Target Start/End: Complemental strand, 5115123 - 5114851
Alignment:
Q  21 agcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatac 120  Q
    ||||||||| ||||| ||||| ||||  || |||||||| || ||||| || ||||||||  |||||||||||||||||||||||||||||| |||||||    
T  5115123 agcataatgtccaaaagtacggtttcgtgtcggtccatctatgtcaatcggagtaccaaccgcacttgcaatttccttcaaggttctctcccaccaatac 5115024  T
Q  121 tcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaac 220  Q
    || ||||||||||||||||| || |||||||  || ||||||||||||||||| ||| || |||| || || || ||||||||||| ||  | ||||| |    
T  5115023 tcctgcggtaactccaccaagcgaatccaaagagatacatgagtctgtttctgagccagatatttgaaatccttggtccattgtgataactttaacaagc 5114924  T
Q  221 caggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcata 293  Q
    | |||||||| || || ||| ||||||||||||| ||| ||| ||| || |||||||||||||||||||||||    
T  5114923 ccggcttgaggttaattgtgcctgctgcccatatcttccttagatcgtcagccgagtcaaaatgaaagtcata 5114851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 20381087 - 20380809
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| |||||||| ||  | |||| ||||||  | || ||||| ||||| || ||||   ||||||| ||||||||||| |||| ||||||||    
T  20381087 atgcgagcatagtgaccaaaagtgtggtttcgagttggctcgtcgatatctataggggtgccaaatgcacttgctatttccttcaatgttcgctcccgcc 20380988  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||||||||||||||| |||||||  || |||||||| ||||| ||| ||   |  ||||||||||| |||||||| || ||||| ||    
T  20380987 aatactcttgcggtaactccaccaaacgaatccaaagcgaaacatgagtttgtttttgcaccaatagcttaaagtcttttgtccattgagagaatcttaa 20380888  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataa 294  Q
    ||| ||||| |||| ||||| |||| | |||||||| || || |||||||| ||| |||| ||||| ||||| ||||||    
T  20380887 caatccaggtttgatatttaccgtgccggctgcccaaatgttttttaaatcatccaccgattcaaagtgaaaatcataa 20380809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 173
Target Start/End: Complemental strand, 12101225 - 12101128
Alignment:
Q  76 ccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctg 173  Q
    ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||  || |||||||  || | ||||||||| |||||    
T  12101225 ccaaccacacttgctatttcattcaatgttctctcccgccaatactcttgcggtaactcaaccagtcgaatccaaagcgataaatgagtctgcttctg 12101128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 15702183 - 15702099
Alignment:
Q  63 atcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    ||||||||| || |||||  ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  15702183 atcaataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatc 15702099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 15717473 - 15717405
Alignment:
Q  83 cacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||| ||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||    
T  15717473 cactttcaatttctttcaaagttctttcccgtcaatactcatgcggtaactcaaccaaacgtatccaaa 15717405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 21152449 - 21152369
Alignment:
Q  63 atcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacg 143  Q
    ||||||||| || |||||  ||||| ||||||| ||||| ||||| |||||||||||||| ||| ||||||| ||||||||    
T  21152449 atcaataggagtgccaacctcactttcaatttctttcaaagttctttcccgccaatactcatgcagtaactcaaccaaacg 21152369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 1442 - 1722
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |||||  |||||||||||||||||||||| ||||||||||    
T  1442 atgcgagcataatgaccaaaagtacgatttctagttggtccatcaatatcaatcggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgcc 1541  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||  || ||||||| |||||||| ||| |||||||| ||||||||||| |||||||||||||| || ||||||||||||||||||||    
T  1542 aatactcttgcggtagttctaccaaacatatccaaagtgatacatgagtttgtttctgcgcttgaaatttaaagtccttggtccattgtgaaaatctcaa 1641  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||||||| ||||||| |||  || ||||||||||||| ||||| ||||||||||||| ||| ||||||||||||||    
T  1642 caaaccaggcttaagatttaccgttcctactgcccatattttttttaagtcctccgccgagttaaagtgaaagtcataata 1722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 17939432 - 17939152
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||| ||||||||||||||| || || ||||| ||||| ||||||||  |||||||||||||| ||| ||||||||||||||    
T  17939432 atgcgagcataatgaccaaaggaacgatttctagttggcccgtcgatatctataggagtaccaactgcacttgcaatttccatcagggttctctcccgcc 17939333  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| |||| |||||||||||| |||||||  ||  ||||||||||||||| || |  || | |||||||||| ||||||||||||||||||||    
T  17939332 aatactcttgtggtagctccaccaaacgaatccaaagcgaagcatgagtctgtttctacgtcaaaattataaagtctttggtccattgtgaaaatctcaa 17939233  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17939232 caaaccaggcttgagatttaccgtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 17939152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 15443048 - 15443328
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||||||||||||||  ||||||||||||||||| || ||||| ||||| ||||||||  |||||||||||||| ||| ||||||||||||||    
T  15443048 atgcgagcataatgaccaaaggagcgatttctagttggtccgtcgatatctataggagtaccaactgcacttgcaatttccatcagggttctctcccgcc 15443147  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| |||| |||||||||| | |||||||  ||   ||||||||||||||||| |  || |||||||||||| || | |||||||||||||||    
T  15443148 aatactcttgtggtagctccaccaaaagaatccaaagcgaagtatgagtctgtttctgcgtcaaaagtttaaagtctttggtgcgttgtgaaaatctcaa 15443247  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15443248 caaaccaggcttgagattgaccgtgcctgctacccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 15443328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 39915291 - 39915510
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||  ||||  ||||||||||||| |||||||| ||||||||||    
T  39915291 atgcgagcataatgaccaaaagtacaatttctagttggtccatcaatatcaatacgtgtttcaaccgcacttgcaatttctttcaaggtcctctcccgcc 39915390  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||  || |||||||||||||||| |||  |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39915391 aatactcttgcggtagttctaccaaacgtatccaaagtgatgcatgagtctgtttctgcgcctgaaatttaaagtccttagtccattgtgaaaatctcaa 39915490  T
Q  216 caaaccaggcttgagattta 235  Q
    || ||||||||| |||||||    
T  39915491 cagaccaggcttaagattta 39915510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 7188442 - 7188223
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| || |||||  |||||||||||||||||||||| ||||||||||    
T  7188442 atgcgagcataatgaccaaaagtacgatttctagttggtccataaatatcaataggtgttccaaccgcacttgcaatttccttcaaggtcctctcccgcc 7188343  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||| |||||| |||  || |||||||||||||||| ||| ||| ||||||| ||||| |||||| |||||||||| || ||||||||||||||||||||    
T  7188342 aatattcttgcagtagttctaccaaacgtatccaaagtgatacacgagtctgcttctgtgcctgatatttaaagtccttggtccattgtgaaaatctcaa 7188243  T
Q  216 caaaccaggcttgagattta 235  Q
    |||||||||||| |||||||    
T  7188242 caaaccaggcttaagattta 7188223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 22 - 293
Target Start/End: Original strand, 33042130 - 33042401
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    ||||| |||||||||||||  ||||  || |||||||| || ||||| || ||||||||   |||||| |||||||||||||||||||||||||||||||    
T  33042130 gcatagtgaccaaaggtacagtttcgtgtcggtccatctatgtcaatcggagtaccaaccggacttgcgatttccttcaaggttctctcccgccaatact 33042229  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | ||||||||||||||||| || |||||||  ||  |||| ||||||||||| |||||| |||| || ||||||||||| ||||| ||||| ||||||||    
T  33042230 cctgcggtaactccaccaagcgaatccaaagagatgcatgtgtctgtttctgagcctgatatttgaaatctttagtccactgtgataatcttaacaaacc 33042329  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcata 293  Q
     |||||||| || |  |||  |||||||||||||||| ||| ||| |||||||||||||| |||||||||||    
T  33042330 cggcttgaggttgactgtgcatgctgcccatattttccttagatcatccgccgagtcaaagtgaaagtcata 33042401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 293
Target Start/End: Original strand, 8668594 - 8668865
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    ||||| |||||||||||||| |||   || || ||||| || ||||| || ||||||||  ||||| | ||||||||||| |||||||||||||||||||    
T  8668594 gcatagtgaccaaaggtacggttttgtgtcggaccatctatgtcaatcggagtaccaaccgcacttacgatttccttcaaagttctctcccgccaatact 8668693  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | ||||||||||||||||| || |||||||  || ||||| || |||||||| || ||| |||| || ||||| ||||||||||| || || | ||||||    
T  8668694 cctgcggtaactccaccaagcgaatccaaagagatacatgtgtttgtttctgagcatgatatttgaaatctttggtccattgtgataaccttagcaaacc 8668793  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcata 293  Q
     |||||||| || |  ||||||||||||||||| |||  || ||| |||||||||||||||||||| |||||    
T  8668794 tggcttgaggttaactgtgtctgctgcccatatcttccctagatcgtccgccgagtcaaaatgaaaatcata 8668865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 10674945 - 10674671
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||| ||||||  || || |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||| |    
T  10674945 gcataatgtccaaaggtatgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaatatt 10674846  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    |||||||||||||||| || || ||||||| ||| |||||||| ||||| || ||  || |||| |||||||| ||||||||||||||||| ||||||||    
T  10674845 cttgcggtaactccactaatcgaatccaaagtgaaacatgagtttgtttttgagcaagatatttgaagtctttggtccattgtgaaaatcttaacaaacc 10674746  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
     ||||| || || | |||  |||||||||||||| |  | |  || |||||||| ||||| ||||||||||||||    
T  10674745 tggcttaaggttcaccgttcctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataata 10674671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 10888585 - 10888311
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||| ||||||  || || |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||| |    
T  10888585 gcataatgtccaaaggtatgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaatatt 10888486  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    |||||||||||||||| || || ||||||| ||| |||||||| ||||| || ||  || |||| |||||||| ||||||||||||||||| ||||||||    
T  10888485 cttgcggtaactccactaatcgaatccaaagtgaaacatgagtttgtttttgagcaagatatttgaagtctttggtccattgtgaaaatcttaacaaacc 10888386  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
     ||||| || || | |||  |||||||||||||| |  | |  || |||||||| ||||| ||||||||||||||    
T  10888385 tggcttaaggttcaccgttcctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataata 10888311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 31 - 296
Target Start/End: Original strand, 1930191 - 1930456
Alignment:
Q  31 ccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggta 130  Q
    ||||| ||||| |||| ||||||||||||||||||||| || || |||||  | || |||||||||||||| ||||||||||||||||||||||| ||||    
T  1930191 ccaaaagtacggtttcgagttggtccatcaatatcaattggagtcccaaccgcgctagcaatttccttcaacgttctctcccgccaatactcttgtggta 1930290  T
Q  131 actccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgag 230  Q
     ||||||||||||||||||||| || ||||| |||||||||| ||  ||| | || || ||||||||||| ||||| ||||  | |||||| |||||| |    
T  1930291 gctccaccaaacgtatccaaatcgatacatgtgtctgtttctacgtttgatacttgaaatctttagtccactgtgagaatcgtagcaaacccggcttgtg 1930390  T
Q  231 atttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
     || || ||  || |||||||||||||| |  |||| |||||||| |||||  |||| ||||||||    
T  1930391 gttaattgtacctactgcccatattttcctataatcatccgccgattcaaagagaaaatcataata 1930456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 296
Target Start/End: Original strand, 10697303 - 10697485
Alignment:
Q  114 ccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctc 213  Q
    |||||| |||||||||||||| ||||| || ||||||| ||| |||||||| ||||| || ||  || |||| |||||||| |||||||||||||| |      
T  10697303 ccaatattcttgcggtaactcaaccaatcgaatccaaagtgaaacatgagtttgtttttgagcaagatatttgaagtctttggtccattgtgaaaaccgt 10697402  T
Q  214 aacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||| ||||| || || | |||  |||||||||||||| |  | |  || |||||||| ||||| ||||||||||||||    
T  10697403 aacaaacccggcttaaggttcaccgttcctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataata 10697485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 296
Target Start/End: Original strand, 10911072 - 10911254
Alignment:
Q  114 ccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctc 213  Q
    |||||| |||||||||||||| ||||| || ||||||| ||| |||||||| ||||| || ||  || |||| |||||||| |||||||||||||| |      
T  10911072 ccaatattcttgcggtaactcaaccaatcgaatccaaagtgaaacatgagtttgtttttgagcaagatatttgaagtctttggtccattgtgaaaaccgt 10911171  T
Q  214 aacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||||| ||||| || || | |||  |||||||||||||| |  | |  || |||||||| ||||| ||||||||||||||    
T  10911172 aacaaacccggcttaaggttcaccgttcctgctgcccatattcttctaaggtcatccgccgattcaaagtgaaagtcataata 10911254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 10693630 - 10693726
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    |||||||| ||||||||||||||||  || || |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||    
T  10693630 gcataatgtccaaaggtacgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaat 10693726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 10907396 - 10907492
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    |||||||| ||||||||| ||||||  || || |||||||| ||||| || ||||| ||  ||||||| |||||||||||  |||||||||||||||    
T  10907396 gcataatgtccaaaggtatgatttcgcgtcggcccatcaatgtcaatcggtgtacctaccgcacttgctatttccttcaaaattctctcccgccaat 10907492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 3582199 - 3582475
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||  ||||| |||||||||||||||| ||||||||||    
T  3582199 atgcaagcataatgaccaaaagtacgatttctagttggtccatcaatatcaataggtgttccaaccgcactttcaatttccttcaaggtcctctcccgcc 3582298  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||  || |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||    
T  3582299 aatactcttgcggtagttctaccaaacgtatccaaagtgatacatgagtctgtttttgcgcctgaaatttaaagtccttggtccattgtgaaaatctcaa 3582398  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcat 292  Q
    ||||| |||||| ||||||| |||  || ||||||||||||  ||||| ||||||||||||||||| ||||||||||    
T  3582399 caaacaaggcttaagatttaccgtccctactgcccatatttattttaagtcctccgccgagtcaaagtgaaagtcat 3582475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 16313442 - 16313173
Alignment:
Q  23 cataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactc 122  Q
    |||| |||||||||||||| ||||  || || ||||| || | ||| || ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  16313442 catagtgaccaaaggtacggtttcgtgtcggcccatctatgttaatcggagtaccaaccgcacttgcaatttccttcaaggttctctcccgccaatactc 16313343  T
Q  123 ttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacca 222  Q
     ||||||||||||||||| |  |||||||   | ||||||||||||||||| ||| || |||| || || ||  |||||||||| || || |||||| |     
T  16313342 ctgcggtaactccaccaagcaaatccaaagatatacatgagtctgtttctgagccagatatttgaaatccttgatccattgtgataaccttaacaaatcc 16313243  T
Q  223 ggcttgagatttatcgtgtctgctgcccatat-tttctttaaatcctccgccgagtcaaaatgaaagtca 291  Q
    |||||||| || || |||  |||||||||||| |||| ||| ||| ||  | ||||||||||||||||||    
T  16313242 ggcttgaggttaattgtgcatgctgcccatatctttccttagatcatcacctgagtcaaaatgaaagtca 16313173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 18494436 - 18494167
Alignment:
Q  23 cataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactc 122  Q
    |||| |||||||||||||| ||||  || || ||||| || | ||| || ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  18494436 catagtgaccaaaggtacggtttcgtgtcggcccatctatgttaatcggagtaccaaccgcacttgcaatttccttcaaggttctctcccgccaatactc 18494337  T
Q  123 ttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacca 222  Q
     ||||||||||||||||| |  |||||||   | ||||||||||||||||| ||| || |||| || || ||  |||||||||| || || |||||| |     
T  18494336 ctgcggtaactccaccaagcaaatccaaagatatacatgagtctgtttctgagccagatatttgaaatccttgatccattgtgataaccttaacaaatcc 18494237  T
Q  223 ggcttgagatttatcgtgtctgctgcccatat-tttctttaaatcctccgccgagtcaaaatgaaagtca 291  Q
    |||||||| || || |||  |||||||||||| |||| ||| ||| ||  | ||||||||||||||||||    
T  18494236 ggcttgaggttaattgtgcatgctgcccatatctttccttagatcatcacctgagtcaaaatgaaagtca 18494167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 20971911 - 20972041
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| || |      |||||||||||||||||||||| ||||||||||    
T  20971911 atgcgagcataatgaccaaaaatacgatttctagttggtccatcaatatcaataggtgtccg-----cacttgcaatttccttcaaggtcctctcccgcc 20972005  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    |||| ||||||||||| || ||||||||||||||||    
T  20972006 aatattcttgcggtaattctaccaaacgtatccaaa 20972041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 14679761 - 14679896
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| |||||||| ||||| || | |||||| ||||||||||| ||||| || |||||| || |||||||||||||||| || |  |||||||    
T  14679761 atgcgagcatagtgaccaaaagtacggttgcgagttggcccatcaatatctataggtgtgccaacggcaattgcaatttccttcaatgtacgttcccgcc 14679860  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||||||||||| |||||||| |||||||    
T  14679861 aatactcttgcggtaactcaaccaaacgaatccaaa 14679896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 296
Target Start/End: Original strand, 20972039 - 20972149
Alignment:
Q  186 aaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatga 285  Q
    |||||| || ||||||||||||||||||||||||| |||||| |||||||  ||  || ||||||||||||| ||||| |||||||  |||||||| |||    
T  20972039 aaagtccttggtccattgtgaaaatctcaacaaactaggcttaagatttacagttcctactgcccatattttttttaagtcctccgttgagtcaaagtga 20972138  T
Q  286 aagtcataata 296  Q
    |||||||||||    
T  20972139 aagtcataata 20972149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 173
Target Start/End: Original strand, 19829761 - 19829882
Alignment:
Q  52 ggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||| ||||| || || |||||    ||||| || |||||||| |||||||||||||||||||| ||||||||||| ||||| || |||||||    
T  19829761 ggtccatcaatgtcaatcggggtgccaaccgtgcttgcgatctccttcaaagttctctcccgccaatactcctgcggtaactcaaccaagcgaatccaaa 19829860  T
Q  152 ttgagacatgagtctgtttctg 173  Q
     ||| ||||| | |||||||||    
T  19829861 gtgatacatgtgcctgtttctg 19829882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 30730835 - 30730557
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||  ||||| ||  | || |||||    |||||||||||||||||||||||||||||||    
T  30730835 atgcgagcataatgaccaaaggtacgatttctagttggcccatagatatctatttgtgttccaactgtgcttgcaatttccttcaaggttctctcccgcc 30730736  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||||||||||||||||||||| |||||||  || |||||||| ||||| ||| ||   || ||||||||||| ||||| || || ||||||||    
T  30730735 aatactcttgcggtaactccaccaaacgaatccaaagcgaaacatgagtttgtttttgcaccaacaacttaaagtctttggtccagtgagagaatctcaa 30730636  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataa 294  Q
    |||||||||||||||||||| |||| |||| ||| | |||||||||||||| ||| |||| || ||| |||| ||||||    
T  30730635 caaaccaggcttgagatttaccgtgcctgcagcctaaattttctttaaatcgtccaccgattcgaaaggaaaatcataa 30730557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 168
Target Start/End: Complemental strand, 21805521 - 21805374
Alignment:
Q  21 agcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatac 120  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||||| || || |||||  |||| |||||||||||||| ||||||||||| ||||||    
T  21805521 agcataatgcccaaaagtacggtttctagttggtccatcaatatcaattggagtcccaaccgcactagcaatttccttcaacgttctctcccgtcaatac 21805422  T
Q  121 tcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgt 168  Q
    ||||| |||| ||||||||||||||||||||| || ||||| ||||||    
T  21805421 tcttgtggtagctccaccaaacgtatccaaatcgatacatgtgtctgt 21805374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 73 - 293
Target Start/End: Original strand, 13311104 - 13311324
Alignment:
Q  73 gtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttct 172  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||  || |||||||| |||||||    
T  13311104 gtaccaaccgcacttgcaatttccttcaaggttctctcccgccaatactcatgcggtaactccaccaagcgaatccaaagagatacatgagtttgtttct 13311203  T
Q  173 gcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgc 272  Q
    | ||  || |||| ||  |||| ||||||||||| ||    |||||||| |||||||| || || ||| || |||| ||||| ||  ||| ||| || |     
T  13311204 gagctagatatttgaaagctttggtccattgtgataactgtaacaaacccggcttgaggttaattgtgcctactgctcatatctttcttagatcgtcagt 13311303  T
Q  273 cgagtcaaaatgaaagtcata 293  Q
    || ||||||||||||||||||    
T  13311304 cgtgtcaaaatgaaagtcata 13311324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 10425361 - 10425545
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    ||||| |||||||||||||| ||||  || |||||||| || || || || ||||||||  ||||||||||||||||||||||||||||| || ||||||    
T  10425361 gcatagtgaccaaaggtacggtttcgtgtcggtccatctatgtcgatcggagtaccaaccgcacttgcaatttccttcaaggttctctcctgcaaatact 10425460  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtga 206  Q
      ||||||||||||||||| || ||||| |  || |||||||| ||||| || ||| || |||| || ||||| |||||||||||    
T  10425461 tctgcggtaactccaccaagcgaatccataaagatacatgagtatgtttttgagccagatatttgaaatctttggtccattgtga 10425545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 233
Target Start/End: Original strand, 11780944 - 11781125
Alignment:
Q  52 ggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||| || || || || ||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||| || ||||  || |||||||    
T  11780944 ggtccatcaatgtctatcggagtgccaaccacacttgctatttccttcaatgttctctcccaccaatactcttgcggtaattcaaccagtcgaatccaaa 11781043  T
Q  152 ttgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatt 233  Q
       | ||||||||||| ||||  ||  || |||| || ||||| |||||||| || | ||| | |||||| |||||||||||    
T  11781044 gcaatacatgagtctgcttctaagcaagatatttgaaatctttggtccattgagatagtcttatcaaacccggcttgagatt 11781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 1625597 - 1625745
Alignment:
Q  25 taatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactctt 124  Q
    ||||| ||||||||||| ||||  || ||||||||||| ||||| || ||||| || |||||||| |||||||||||  |||||||| ||||||| || |    
T  1625597 taatggccaaaggtacggtttcgtgtcggtccatcaatgtcaatcggggtacccaccacacttgctatttccttcaaaattctctcctgccaatattcct 1625696  T
Q  125 gcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctg 173  Q
    |||||||||| || || || ||||| | |||  |||| |||||||||||    
T  1625697 gcggtaactctacgaatcgaatccagagtgaagcatgggtctgtttctg 1625745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 296
Target Start/End: Complemental strand, 21797428 - 21797294
Alignment:
Q  162 agtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctgcccatattttcttt 261  Q
    |||||||||||||| |||| | || || ||||||||||| ||||| || |  | |||||| |||||||| || || ||  || |||||||||||||| |     
T  21797428 agtctgtttctgcgtctgatacttgaaatctttagtccactgtgagaagcgtagcaaacccggcttgaggttaattgtacctactgcccatattttccta 21797329  T
Q  262 aaatcctccgccgagtcaaaatgaaagtcataata 296  Q
     |||| |||||||| |||||  |||| ||||||||    
T  21797328 taatcatccgccgattcaaagagaaaatcataata 21797294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 21591544 - 21591270
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||||||||||  || ||||||||||| ||||| || ||||| || |||||||| |||||||||||  |||||  ||||||||| |    
T  21591544 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccacacttgctatttccttcaaaattctcaaccgccaatatt 21591445  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    ||||||||||||||||||| || ||||||| ||| ||||||||||||||||| ||  || |||| |||||||| |||||||||||||| || ||||||||    
T  21591444 cttgcggtaactccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaagtctttggtccattgtgaaaaccttaacaaacc 21591345  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
     |||||||| || | |||| ||||||||||||||||  | |  || |||||||||||||| ||||||||||||||    
T  21591344 tggcttgaggttcaccgtgcctgctgcccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataata 21591270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 14411721 - 14411447
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||||||||||  || ||||||||||| ||||| || ||||| ||  | ||||| |||||||||||  |||||||||||||||| |    
T  14411721 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccgctcttgctatttccttcaaaattctctcccgccaatatt 14411622  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | ||||||||||||||||| || ||||||| ||| ||||||||||||||||| ||  || |||| |||||||| |||||||||||||| || ||||||||    
T  14411621 cctgcggtaactccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaagtctttggtccattgtgaaaaccttaacaaacc 14411522  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
     |||||||| || | |||| ||||||||||||||||  | |  || || ||||||||||| ||||||||||||||    
T  14411521 tggcttgaggttcaccgtgcctgctgcccatatttttctaaggtcatctgccgagtcaaagtgaaagtcataata 14411447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 35 - 296
Target Start/End: Complemental strand, 23600286 - 23600025
Alignment:
Q  35 aggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactc 134  Q
    ||||||||||||  || ||||||||||| ||||| || ||||| |   ||||||| ||||| | |||  |||| |||| |||||| || |||||||||||    
T  23600286 aggtacgatttcgcgtcggtccatcaatttcaatcggtgtacctatcgcacttgctatttcttacaaaattctttcccaccaatattcctgcggtaactc 23600187  T
Q  135 caccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagattt 234  Q
    ||||||||| ||||||| ||| |||||| | |||||||| ||  || |||| |||||||| |||||||||||||| || ||||| || | |||||| ||     
T  23600186 caccaaacgaatccaaagtgaaacatgattttgtttctgagcaagatatttgaagtctttggtccattgtgaaaaccttaacaatcccgacttgaggttc 23600087  T
Q  235 atcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    |||||| ||  ||||||||||||  | |  || |||||||||||||| ||||||||||||||    
T  23600086 atcgtgccttttgcccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataata 23600025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 4207537 - 4207601
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaac 80  Q
    ||||||||||||||||||||||||| |||||||||||  ||||| ||||||||||| || |||||    
T  4207537 atgcgagcataatgaccaaaggtaccatttctagttgacccatcgatatcaataggtgttccaac 4207601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 18694141 - 18694077
Alignment:
Q  83 cacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  18694141 cactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatc 18694077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 17458800 - 17458714
Alignment:
Q  54 tccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaa 140  Q
    ||||||||| ||||| || || |||||  | ||||| ||||||||| | ||||||||| ||||||| || ||||||||||| |||||    
T  17458800 tccatcaatgtcaatcggggtgccaaccgcgcttgcgatttccttcgaagttctctcctgccaatattcctgcggtaactcaaccaa 17458714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 6990 - 7264
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatact 121  Q
    |||||||| ||||||||||||||||  || ||||||||||| ||||| || ||||| ||  | ||||| |||||||||||  |||||||||||||||| |    
T  6990 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgtcaatcggtgtacctaccgcgcttgctatttccttcaaaattctctcccgccaatatt 7089  T
Q  122 cttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaacc 221  Q
    | ||||||||||||||||| || ||||||| ||| ||||||||||||||||| ||  || |||| |||||||| |||||||||||||| || ||||||||    
T  7090 cctgcggtaactccaccaatcgaatccaaagtgaaacatgagtctgtttctgagcaagatatttgaagtctttggtccattgtgaaaaccttaacaaacc 7189  T
Q  222 aggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
     |||||||| || | |||| ||||||||||||||||  | |  || || ||||||||||| ||||||||||||||    
T  7190 tggcttgaggttcaccgtgcctgctgcccatatttttctaaggtcatctgccgagtcaaagtgaaagtcataata 7264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0292 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0292
Description:

Target: scaffold0292; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 248
Target Start/End: Complemental strand, 19591 - 19364
Alignment:
Q  21 agcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatac 120  Q
    ||||||||||||||| | |||||||||||||||||| || ||||| ||||| || ||||   |||||||||||||||||||||||||||||||||||||     
T  19591 agcataatgaccaaatgcacgatttctagttggtccgtcgatatctataggtgttccaattgcacttgcaatttccttcaaggttctctcccgccaatat 19492  T
Q  121 tcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaac 220  Q
    |||||||||||||||||||| || |||||||  || |||||||| ||||| || |||  ||  ||||||||||| |||||||| || ||| |||||||||    
T  19491 tcttgcggtaactccaccaagcgaatccaaagcgaaacatgagtttgtttttgtgccaaaagcttaaagtcttttgtccattgagagaatttcaacaaac 19392  T
Q  221 caggcttgagatttatcgtgtctgctgc 248  Q
    |||||||||||| || |||| |||||||    
T  19391 caggcttgagatgtaccgtgcctgctgc 19364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 293
Target Start/End: Complemental strand, 9381 - 9107
Alignment:
Q  19 cgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    |||||||||||||||||  |||| ||||| ||||| ||||||||||||||||| ||||| ||  ||||||| || |||||||| || |||||||||||||    
T  9381 cgagcataatgaccaaacatacggtttctggttgggccatcaatatcaataggtgtacccacatcacttgctatctccttcaaagtcctctcccgccaat 9282  T
Q  119 actcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaa 218  Q
    ||||||||||||| || | ||| ||||||||||  || || |||||||| || ||||||   || ||||||||||| ||||| || ||||||||||| ||    
T  9281 actcttgcggtaattcaatcaaccgtatccaaagcgaaacgtgagtctgcttttgcgccaacaacttaaagtcttttgtccactgagaaaatctcaataa 9182  T
Q  219 accaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcata 293  Q
    ||| ||||| ||||| || ||| ||| |||||||||||||||||  || || ||||| ||||||||||| |||||    
T  9181 acctggcttaagattcatagtgcctgttgcccatattttctttaggtcttcagccgaatcaaaatgaaaatcata 9107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 20942362 - 20942640
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||||| || ||| |||| || |||||||||||||| |  |||||||    
T  20942362 atgcgagcataatgcccaaaggtacggtttctagttggcccatcaatgtcaataggcgtgcccacggcactagctatttccttcaaggtacgttcccgcc 20942461  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||||||||| || |||||||  || |||||||| ||||| ||| ||  || |||||| ||||| |||||||| || || |  ||    
T  20942462 aatactcttgcggtaactccaccaagcgaatccaaagcgaaacatgagtttgtttttgcaccaaaagtttaaaatctttggtccattgagagaaccgtaa 20942561  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataa 294  Q
    ||  |||||||| || || | |||| ||||||||||||| | || |||||| ||| |||||||||| ||||| ||||||    
T  20942562 cagtccaggcttaaggttcaccgtgcctgctgcccatatctgctgtaaatcgtccaccgagtcaaagtgaaaatcataa 20942640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 3729248 - 3729520
Alignment:
Q  24 ataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactct 123  Q
    |||||| ||||||||||||||||  || ||||||||||| ||||| || ||||| ||  ||||||  |||||||||||  |||||||||||||||| |||    
T  3729248 ataatgtccaaaggtacgatttcacgtcggtccatcaatgtcaatcggtgtacctactgcacttgttatttccttcaaaattctctcccgccaatattct 3729347  T
Q  124 tgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccag 223  Q
    ||||||||||||||||| || ||||||| ||| |||||||||| |||||| ||  || |||| |||||||| |||||||||||||| |  ||||||||      
T  3729348 tgcggtaactccaccaatcgaatccaaagtgaaacatgagtctatttctgagcaagatatttgaagtctttggtccattgtgaaaaccgtaacaaaccca 3729447  T
Q  224 gcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    ||||||| || | |||| |||||| |||||||||  | |  || |||||||||||||| ||||||||||||||    
T  3729448 gcttgaggttcaccgtgcctgctggccatatttttctaaggtcatccgccgagtcaaagtgaaagtcataata 3729520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 48 - 294
Target Start/End: Complemental strand, 38179 - 37933
Alignment:
Q  48 agttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    |||||| || || |||||||||||||| |||||   |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||    
T  38179 agttggcccgtctatatcaataggcgtgccaactgtacttgctatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaacgaatc 38080  T
Q  148 caaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctg 247  Q
    ||||  || |||||||| ||||| ||||||   || ||||||||||| ||||||||||| ||||  ||||| ||||| || ||||||| |||| | ||||    
T  38079 caaagcgaaacatgagtttgtttttgcgccaacaacttaaagtcttttgtccattgtgagaatcgtaacaatccaggtttaagatttaccgtgccggctg 37980  T
Q  248 cccatattttctttaaatcctccgccgagtcaaaatgaaagtcataa 294  Q
    |||| || ||||||||||| ||| |||| ||||| ||||| ||||||    
T  37979 cccaaatgttctttaaatcatccaccgattcaaagtgaaaatcataa 37933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 48 - 294
Target Start/End: Original strand, 160600 - 160846
Alignment:
Q  48 agttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    |||||| || || |||||||||||||| |||||   |||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||    
T  160600 agttggcccgtctatatcaataggcgtgccaactgtacttgctatttccttcaatgttcgctcccgccaatactcttgcggtaactccaccaaacgaatc 160699  T
Q  148 caaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagatttatcgtgtctgctg 247  Q
    ||||  || |||||||| ||||| ||||||   || ||||||||||| ||||||||||| ||||  ||||| ||||| || ||||||| |||| | ||||    
T  160700 caaagcgaaacatgagtttgtttttgcgccaacaacttaaagtcttttgtccattgtgagaatcgtaacaatccaggtttaagatttaccgtgccggctg 160799  T
Q  248 cccatattttctttaaatcctccgccgagtcaaaatgaaagtcataa 294  Q
    |||| || ||||||||||| ||| |||| ||||| ||||| ||||||    
T  160800 cccaaatgttctttaaatcatccaccgattcaaagtgaaaatcataa 160846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 61288 - 61565
Alignment:
Q  19 cgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    ||||||||||| ||||| ||||| |||| ||| ||||||||||||||||| || || |||||  ||||||||||||| ||||| ||||||||||||||||    
T  61288 cgagcataatgtccaaaagtacggtttcgagtgggtccatcaatatcaattggagtcccaaccgcacttgcaatttctttcaacgttctctcccgccaat 61387  T
Q  119 actcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaa 218  Q
    ||||||| |||||||||||||||||||||||||  || ||||| ||||| || || | |||| | || || || |||||||| || || ||||  | |||    
T  61388 actcttgtggtaactccaccaaacgtatccaaagcgatacatgtgtctgcttttgtgtctgatacttgaaatccttagtccactgagagaatcgtagcaa 61487  T
Q  219 accaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatgaaagtcataata 296  Q
    ||| |||||||| || || ||| || |||||||||||||| |  |||| |||||||| |||||  |||| ||||||||    
T  61488 acccggcttgaggttaattgtgcctactgcccatattttcctataatcatccgccgattcaaagagaaaatcataata 61565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 5802 - 5534
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    |||||||||||||| ||||| ||||| ||||||||||| || || || |||||||| ||||| ||| ||||||||||||||||||  ||||| |||||||    
T  5802 atgcgagcataatgcccaaaagtacggtttctagttgggccgtctatgtcaataggtgtacccacggcacttgcaatttccttcagagttctttcccgcc 5703  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    |||||||||| || |||||||| || || |||||||  || |||||||| || ||||| | |  ||  |||||||| |||||||||||||| || | |||    
T  5702 aatactcttgaggcaactccactaaccggatccaaagcgaaacatgagtttgcttctgtgtcaaaagcttaaagtccttagtccattgtgagaagcgcaa 5603  T
Q  216 caaaccaggcttgagatttatcgtgtctgctgcccatattttctttaaatcctccgccgagtcaaaatg 284  Q
    || ||| ||||| ||||| |  ||| | || ||||| |||||||| |||||||||| ||| ||||||||    
T  5602 cagaccgggcttaagattgacggtgccagcagcccaaattttcttcaaatcctccgacgactcaaaatg 5534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 10510 - 10378
Alignment:
Q  19 cgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaat 118  Q
    ||||||||||| ||||| ||||| |||| ||| ||||||||||||||||| || || |||||  ||||||||||||| ||||| ||||||||||||||||    
T  10510 cgagcataatgtccaaaagtacggtttcgagtgggtccatcaatatcaattggagtcccaaccgcacttgcaatttctttcaacgttctctcccgccaat 10411  T
Q  119 actcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||| ||||||||||||||| |||||||||    
T  10410 actcttgtggtaactccaccaaatgtatccaaa 10378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 12216 - 11992
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| |||||||| ||||| |||| ||||   ||||||||||| |||||||| || ||| ||||||||||||||||||| || | ||||||||    
T  12216 atgcgagcatagtgaccaaatgtacggtttcgagttatcccatcaatatctataggcgtgcctacggcacttgcaatttccttcaatgtacgctcccgcc 12117  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaa 215  Q
    ||||||||||||||||||| |||||||| |||||||  || ||||| || || |||||| ||  || ||| || ||||| |||||||| || || |  ||    
T  12116 aatactcttgcggtaactcaaccaaacgaatccaaaacgatacatgcgtttgcttctgcaccaaaagtttgaaatcttttgtccattgagagaaacgtaa 12017  T
Q  216 caaaccaggcttgagatttatcgtg 240  Q
    ||| ||||| ||||| |||| ||||    
T  12016 caatccaggtttgaggtttaccgtg 11992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 31360 - 31495
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| ||||||||  |||| |||| |||||| ||||||||||| ||||| || |||||| ||||||||||||||||||| || |  |||||||    
T  31360 atgcgagcatagtgaccaaaattacggtttcgagttggcccatcaatatctataggtgtgccaacggcacttgcaatttccttcaatgtacattcccgcc 31459  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||||||||||| |||||||| |||||||    
T  31460 aatactcttgcggtaactcaaccaaacgaatccaaa 31495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 40671 - 40806
Alignment:
Q  16 atgcgagcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgcc 115  Q
    ||||||||||| |||||||| ||||| |||| |||||| ||||||||||| ||||| || |||||| ||||||||||||||||| | || |  |||||||    
T  40671 atgcgagcatagtgaccaaaagtacggtttcgagttggcccatcaatatctataggtgtgccaacggcacttgcaatttccttctatgtacattcccgcc 40770  T
Q  116 aatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||||||||||||||||  |||||||| |||||||    
T  40771 aatactcttgcggtaactgaaccaaacgaatccaaa 40806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 51095 - 51011
Alignment:
Q  63 atcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    ||||||||| || |||||  ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  51095 atcaataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatc 51011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 63634 - 63550
Alignment:
Q  63 atcaataggcgtaccaacgacacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatc 147  Q
    ||||||||| || |||||  ||||| ||||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  63634 atcaataggagtgccaaccgcactttcaatttctttcaaagttctttcccgccaatactcatgcggtaactcaaccaaacgtatc 63550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 66031 - 65963
Alignment:
Q  83 cacttgcaatttccttcaaggttctctcccgccaatactcttgcggtaactccaccaaacgtatccaaa 151  Q
    ||||| ||||||| ||||| ||||| ||||| |||||||| ||||||||||| ||||||||||||||||    
T  66031 cactttcaatttctttcaaagttctttcccgtcaatactcatgcggtaactcaaccaaacgtatccaaa 65963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 257
Target Start/End: Complemental strand, 59627 - 59505
Alignment:
Q  135 caccaaacgtatccaaattgagacatgagtctgtttctgcgcctgaaatttaaagtctttagtccattgtgaaaatctcaacaaaccaggcttgagattt 234  Q
    |||||| || ||||||| ||| |||||||||||||| || ||  || |||| |||||||| ||||||||||||||    |||||||| |||||||| ||     
T  59627 caccaatcgaatccaaagtgaaacatgagtctgtttatgagcaagatatttgaagtctttggtccattgtgaaaactgtaacaaacccggcttgaggttg 59528  T
Q  235 atcgtgtctgctgcccatatttt 257  Q
    |  ||| ||||||||||||||||    
T  59527 actgtgcctgctgcccatatttt 59505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 59714 - 59635
Alignment:
Q  22 gcataatgaccaaaggtacgatttctagttggtccatcaatatcaataggcgtaccaacgacacttgcaatttccttcaa 101  Q
    |||||||| ||||||||||||||||  || ||||||||||| | ||| || ||| | || |||||||| |||||||||||    
T  59714 gcataatgtccaaaggtacgatttcgcgtcggtccatcaatgttaatcggtgtatctaccacacttgctatttccttcaa 59635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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