View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18721_low_14 (Length: 247)
Name: NF18721_low_14
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18721_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 5509495 - 5509733
Alignment:
| Q |
1 |
ttaactcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaagct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5509495 |
ttaactcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaagct |
5509594 |
T |
|
| Q |
101 |
tggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactactagaaaactttcagttaccacaatccctata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5509595 |
tggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactattagaaaactttcagttaccacaatccctata |
5509694 |
T |
|
| Q |
201 |
aaaccaagcccaattccagaaattgctcaaccccctttg |
239 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
5509695 |
aaaccaaccccaattccagaaattgctcaaccccctttg |
5509733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 20432799 - 20432989
Alignment:
| Q |
1 |
ttaactcaacattttctctcataccaagttcaaagttttcacatttttctgataaaagtttgaactttgtgtcttcccatttagaatccatgaaaaagct |
100 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20432799 |
ttaactcaacattttctctcataccaagttcaaggttttcacatttttctgataaaggttcaaactttgtgtcttcccatttagaatccatgaaaaagct |
20432898 |
T |
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| Q |
101 |
tggatttttcaaccataacaatatcataaacattgctaccattgtcccaaaagagagaaaaatcactactagaaaactttcagttaccacaat |
193 |
Q |
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||||||||||| || | ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
20432899 |
tggatttttcagcc--accaatatcataaacattgctaccattgtaccaaaagagataaaaatcactactagaaaactttcagttaccacaat |
20432989 |
T |
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