View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18721_low_4 (Length: 669)
Name: NF18721_low_4
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18721_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 255 - 652
Target Start/End: Original strand, 5444691 - 5445088
Alignment:
| Q |
255 |
tacttttaatctaccatgcatactgatatctttgtcactatgaagtctgaaaacaattgtgactttgcgaattttagttgttttcaaattaatttcaaac |
354 |
Q |
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| T |
5444691 |
tacttttaatctaccatgcatactgatatctttgtcactatgaagtctgaaaacaattgtgagtttgcgaattttagttgttttcaaattaatttcaaac |
5444790 |
T |
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| Q |
355 |
aatgatcacaaaatatttaacaaactatatgactattggactgattaatagtatatctaatcataattttcaaaattcaacattttgcaaagtataagtt |
454 |
Q |
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| T |
5444791 |
aatgatcacaaaatatttaacaaactatatgactattggactgattaatagtatatctaatcataattttcaaaattcaacattttgcaaagtataagtt |
5444890 |
T |
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| Q |
455 |
aaacacacaatcacattgctgacaacaaaattggattgtgaccaattaatgtacaacatgactagcatgtgatattttcaaattaattaggttaccggca |
554 |
Q |
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| T |
5444891 |
aaacacacaatcacattgctgacaacaaaattggattgtcaccaattaatgtacaacatgactagcatgtgatattttcaaattaattaggttaccggca |
5444990 |
T |
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| Q |
555 |
atgaacatgctgcaggtatgttaatttaattgattaattaagctcataaaggaatttttgtgatgaactatgaaagataaatgagctggatttgtatt |
652 |
Q |
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| T |
5444991 |
atgaacatgctgcaggtatgttaatttaattgattaattaagctcataaaggaatttttgtgatgaactatgaaagataaatgagctggatttgtatt |
5445088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 72 - 189
Target Start/End: Original strand, 5444508 - 5444625
Alignment:
| Q |
72 |
catattaaatcttggtatcatgtttccatattcattagggacattagatctcatattagtaccatgatgnnnnnnnntaatgagctaaatacgtgattag |
171 |
Q |
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| T |
5444508 |
catattcaatcttggtaccatgtttccatattaattagggaccttagatctcatattagtaccatgatgaaaaaaaataatgagctaaatacgtgattag |
5444607 |
T |
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| Q |
172 |
atcaatttattttagaat |
189 |
Q |
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| T |
5444608 |
atcaatttattttagaat |
5444625 |
T |
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