View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18721_low_6 (Length: 551)

Name: NF18721_low_6
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18721_low_6
NF18721_low_6
[»] chr2 (18 HSPs)
chr2 (18-542)||(31256528-31257052)
chr2 (46-311)||(31293813-31294083)
chr2 (356-480)||(31387872-31387997)
chr2 (350-527)||(31293554-31293734)
chr2 (373-476)||(31308037-31308140)
chr2 (350-476)||(31324768-31324895)
chr2 (381-477)||(31375599-31375695)
chr2 (377-472)||(31418440-31418535)
chr2 (381-480)||(31282528-31282626)
chr2 (83-309)||(31375816-31376043)
chr2 (382-485)||(31361222-31361325)
chr2 (204-311)||(31308249-31308356)
chr2 (47-153)||(31325073-31325180)
chr2 (83-129)||(31388262-31388308)
chr2 (45-129)||(31361606-31361690)
chr2 (85-129)||(31282908-31282952)
chr2 (245-309)||(31361410-31361474)
chr2 (33-117)||(31418029-31418116)
[»] chr5 (1 HSPs)
chr5 (403-480)||(36213754-36213831)


Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 31257052 - 31256528
Alignment:
Q  18 attaattacatgaacaataagctaatgacatgtttcttaattatcacagtagtctccccagcaaccgattaacgggttcaataccagtggagatcgcaaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31257052 attaattacatgaacaataagctaatgacatgtttcttaattatcacagtagtctccccagcaaccgattaacgggttcaataccagtggagatcgcaaa 31256953  T
Q  118 tatatctactctgatacaattgtaagttgctcattatccaattagcnnnnnnntatccattcgtgttcatttcaaagagtttatgcagaacttaatttta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  31256952 tatatctactctgatacaattgtaagttgctcattatccaattagcaaaaaaatatccattcgtgttcatttcaaagagtttatgcagaacttaatttta 31256853  T
Q  218 acttgaaatgaatagggatttaacggccaatcaaatgtcggaaaatattcctcatgagcttgggaatctaagccagatacgaacactgtaagtagnnnnn 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  31256852 acttgaaatgaatagggatttaacggccaatcaaatgtcggaaaatattcctcatgagcttgggaatctaagccagatacgaacactgtaagtagttttt 31256753  T
Q  318 nnnccacccttaattgatgtttccatatggaatagaaccataatttactgttatgttttcaattatatataggaaactttcctctaacaattttaccgga 417  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31256752 tttccacccttaattgatgtttccatatggaatagaaccataatttactgttatgttttcaattatatataggaaactttcctctaacaattttaccgga 31256653  T
Q  418 gaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaaatttttatgatgtcaactgatgaataagttaaaaaatatttttta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31256652 gaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaaatttttatgatgtcaactgatgaataagttaaaaaatatttttta 31256553  T
Q  518 tgataaattttcacaccctctctga 542  Q
    ||||||||||||||| |||||||||    
T  31256552 tgataaattttcacatcctctctga 31256528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 46 - 311
Target Start/End: Complemental strand, 31294083 - 31293813
Alignment:
Q  46 catgtttcttaattatcacagtagtctccccagcaaccgattaacgggttcaataccagtggagatcgcaaatatatctactctgatacaattgtaagtt 145  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||    
T  31294083 catgtttcttaattatcacagtagtctccccagcaatcgattaacgggttcaataccagtggagattgcaaatatatctactctgatacagttgtgagtt 31293984  T
Q  146 gctcattat-ccaattagc---nnnnnnnta-tccattcgtgttcatttcaaagagtttatgcagaacttaattttaacttgaaatgaatagggatttaa 240  Q
     || ||||| ||| |||||          || | ||| || ||||| || |||||||||| | |||| |||| |||||||| ||||| ||||||||||||    
T  31293983 actgattatcccacttagcaaagaaaatctatttcatacgagttcaattaaaagagtttaagtagaagttaactttaactttaaatggatagggatttaa 31293884  T
Q  241 cggccaatcaaatgtcggaaaatattcctcatgagcttgggaatctaagccagatacgaacactgtaagta 311  Q
    |||||||||||||||| | ||  ||||||| ||||||||| ||||||| |||||| |||||||||||||||    
T  31293883 cggccaatcaaatgtctggaatcattcctcgtgagcttggaaatctaacccagattcgaacactgtaagta 31293813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 356 - 480
Target Start/End: Complemental strand, 31387997 - 31387872
Alignment:
Q  356 cataatttactgttatgtttt-caattatatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcaccacattgc 454  Q
    |||||||||||||| |||||| ||||||||||||||  | |||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||||    
T  31387997 cataatttactgttttgttttacaattatatataggcgattttcctctaataattttactggagaactacctgcgacattcgccaagctcactacattgc 31387898  T
Q  455 aagatttgtaagcttcaaatttttat 480  Q
    ||||||||||||||||||||||||||    
T  31387897 aagatttgtaagcttcaaatttttat 31387872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 350 - 527
Target Start/End: Complemental strand, 31293734 - 31293554
Alignment:
Q  350 tagaaccataatttactgttatgtttt-caattat--atataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcac 446  Q
    ||||| |||||||| ||||| |||||| ||||| |  |||||||||| | |||||||| |||||||| |||||||||||||| |||||||||||||||||    
T  31293734 tagaatcataatttgctgttttgtttttcaattgtgtatataggaaaatgtcctctaataattttactggagaactacctgccacattggcaaagctcac 31293635  T
Q  447 cacattgcaagatttgtaagcttcaaatttttatgatgtcaactgatgaataagttaaaaaatattttttatgataaattt 527  Q
     |||||||  ||||||||||||||||| ||||| ||| | || |||||||||| ||| |||||| || |||||| ||||||    
T  31293634 tacattgcgcgatttgtaagcttcaaagttttacgatattaagtgatgaataaattataaaataattcttatgagaaattt 31293554  T

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Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 373 - 476
Target Start/End: Complemental strand, 31308140 - 31308037
Alignment:
Q  373 ttttcaattatatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaa 472  Q
    |||||||| |||||||||  | ||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||| ||||||||||||||| ||    
T  31308140 ttttcaatgatatataggcgattttcctctaacaattttactggagaactacctgcgacattagctaagctcactacattggaagatttgtaagcttaaa 31308041  T
Q  473 attt 476  Q
    ||||    
T  31308040 attt 31308037  T

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Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 350 - 476
Target Start/End: Complemental strand, 31324895 - 31324768
Alignment:
Q  350 tagaaccataatttactgttatgtttt-caattatatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcacca 448  Q
    ||||| |||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||  ||||||||||| | |||||| | ||| |||| |    
T  31324895 tagaatcataatttactgttttgtttttcaattatatataggaaaatgtcctctaacaattttactagagaactacctacaacattgtccaaggtcacta 31324796  T
Q  449 cattgcaagatttgtaagcttcaaattt 476  Q
    |||||| |||||||||||| ||||||||    
T  31324795 cattgcgagatttgtaagcatcaaattt 31324768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 31375695 - 31375599
Alignment:
Q  381 tatatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaaatttt 477  Q
    |||||||||| || |||| |||||||||||||| || |||||||||||||||||||||||||| || ||||||  ||||||||||||||||||||||    
T  31375695 tatatataggcaaatttcatctaacaattttactggcgaactacctgcgacattggcaaagctgactacattgatagatttgtaagcttcaaatttt 31375599  T

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Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 377 - 472
Target Start/End: Original strand, 31418440 - 31418535
Alignment:
Q  377 caattatatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaa 472  Q
    ||||||||||||||  |||||| |||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||||| |||||    
T  31418440 caattatatataggcgactttcatctaacaaatttactggagaactacctgcgacattcgccaagctcactacattgcaagagttgtaagtttcaa 31418535  T

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Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 381 - 480
Target Start/End: Complemental strand, 31282626 - 31282528
Alignment:
Q  381 tatatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaaatttttat 480  Q
    |||||||||| || |||| |||||||||||||| || ||||||||||| |||||||||||||| || ||||||  |||||||||||| ||||||||||||    
T  31282626 tatatataggcaaatttcatctaacaattttacgggtgaactacctgcaacattggcaaagctgactacattgatagatttgtaagc-tcaaatttttat 31282528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 83 - 309
Target Start/End: Complemental strand, 31376043 - 31375816
Alignment:
Q  83 cgattaacgggttcaataccagtggagatcgcaaatatatctactctgatacaattgtaagttgctcattatccaatt-agcnnnnnnntatccattcgt 181  Q
    ||||||||||||||||||||||| ||||| ||||| ||| |||||||   | | ||||||||| ||||||| ||| || | |        ||||||| ||    
T  31376043 cgattaacgggttcaataccagttgagattgcaaacataactactctccaagacttgtaagtttctcattacccactttatcagaaaaacatccatttgt 31375944  T
Q  182 gttcatttcaaagagtttatgcagaacttaattttaacttgaaatgaatagggatttaacggccaatcaaatgtcggaaaatattcctcatgagcttggg 281  Q
    ||||| ||||||||||||  |  |||||||| |||||||| ||||| ||||||| |||  |  ||||||| |||| | |||| |||||| ||||||||||    
T  31375943 gttcaattcaaagagtttcagttgaacttaactttaacttaaaatggatagggagttatggaacaatcaactgtctggaaatcttcctcctgagcttggg 31375844  T
Q  282 aatctaagccagatacgaacactgtaag 309  Q
     |||||||||| || |||| ||||||||    
T  31375843 tatctaagccaaattcgaagactgtaag 31375816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 382 - 485
Target Start/End: Complemental strand, 31361325 - 31361222
Alignment:
Q  382 atatataggaaactttcctctaacaattttaccggagaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaaatttttatg 481  Q
    ||||||||| || ||||||| ||||||||||| | |||||||||   ||||||||| |||||||  ||||||||||||||||||| |||||  |||||||    
T  31361325 atatataggcaattttcctcgaacaattttactgtagaactaccaatgacattggccaagctcattacattgcaagatttgtaagtttcaagcttttatg 31361226  T
Q  482 atgt 485  Q
    ||||    
T  31361225 atgt 31361222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 204 - 311
Target Start/End: Complemental strand, 31308356 - 31308249
Alignment:
Q  204 agaacttaattttaacttgaaatgaatagggatttaacggccaatcaaatgtcggaaaatattcctcatgagcttgggaatctaagccagatacgaacac 303  Q
    ||||||||| |||||||||||||| |||| || ||| |||  ||||||||||  | ||||||||||| ||||||||| ||||||| |||||| | || ||    
T  31308356 agaacttaactttaacttgaaatggatagtgagttatcggaaaatcaaatgtttggaaatattcctcctgagcttggaaatctaacccagattcaaagac 31308257  T
Q  304 tgtaagta 311  Q
    ||||||||    
T  31308256 tgtaagta 31308249  T

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Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 31325180 - 31325073
Alignment:
Q  47 atgtttcttaattatcacagtagtctccccagcaaccgattaacggg-ttcaataccagtggagatcgcaaatatatctactctgatacaattgtaagtt 145  Q
    |||||||||||| |||| |||| |||| |  | || ||||||||||| |||| |||||| |||||| |||||||||||||||||||| || |||| ||||    
T  31325180 atgtttcttaatcatcatagtactctctctggaaatcgattaacggggttcagtaccagcggagattgcaaatatatctactctgatgcatttgtgagtt 31325081  T
Q  146 gctcatta 153  Q
     |||||||    
T  31325080 actcatta 31325073  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 31388308 - 31388262
Alignment:
Q  83 cgattaacgggttcaataccagtggagatcgcaaatatatctactct 129  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  31388308 cgattaacgggttcaataccagtggagattgcaaacatatctactct 31388262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 31361690 - 31361606
Alignment:
Q  45 acatgtttcttaattatcacagtagtctccccagcaaccgattaacgggttcaataccagtggagatcgcaaatatatctactct 129  Q
    |||||||||||||| || |||||||||||  | | || || ||||| ||||||||||||| |||||| ||||| |||||||||||    
T  31361690 acatgtttcttaatcataacagtagtctcttcggaaatcgtttaactggttcaataccagcggagattgcaaacatatctactct 31361606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 31282952 - 31282908
Alignment:
Q  85 attaacgggttcaataccagtggagatcgcaaatatatctactct 129  Q
    ||||||||||||||||||||||||||| ||||| ||| |||||||    
T  31282952 attaacgggttcaataccagtggagattgcaaacataactactct 31282908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 31361474 - 31361410
Alignment:
Q  245 caatcaaatgtcggaaaatattcctcatgagcttgggaatctaagccagatacgaacactgtaag 309  Q
    |||||| ||||| | |||||||||||  |||||||||||||||| |||||| |||| ||||||||    
T  31361474 caatcagatgtctggaaatattcctcccgagcttgggaatctaacccagattcgaatactgtaag 31361410  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 31418029 - 31418116
Alignment:
Q  33 aataagctaatgaca---tgtttcttaattatcacagtagtctccccagcaaccgattaacgggttcaataccagtggagatcgcaaa 117  Q
    |||||||||||||||   ||||||||||| |||| |||  ||||| | | || | ||||||||||||||||||||| ||||| |||||    
T  31418029 aataagctaatgacaacatgtttcttaatcatcatagtgctctcctcggaaatcaattaacgggttcaataccagttgagattgcaaa 31418116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 36213831 - 36213754
Alignment:
Q  403 aacaattttaccggagaactacctgcgacattggcaaagctcaccacattgcaagatttgtaagcttcaaatttttat 480  Q
    |||||||| || |||||||||||||| |||||||| || |||||||||||||| ||| |||||| || | ||||||||    
T  36213831 aacaatttcactggagaactacctgctacattggccaaactcaccacattgcaggatatgtaagattaatatttttat 36213754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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