View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18721_low_7 (Length: 463)
Name: NF18721_low_7
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18721_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 12 - 449
Target Start/End: Original strand, 43516358 - 43516795
Alignment:
| Q |
12 |
ataaaaaataaatgacaatactcacttaatatatatcgttggatgaatccaacgtaaaacaggagaaatcgaatccctagttaatacttagttgctttgt |
111 |
Q |
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| T |
43516358 |
ataaaaaataaacgacaatactcacttaatatatatcgttggatgaatccaacgtaaaataggagaaattgaatccctagttaatacttaattgctttgt |
43516457 |
T |
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| Q |
112 |
aaggtaacaacggcttgggaggaaaggaaccttaaagtaaaaacgcttcattgcttatagatgttgctcaatgatttcatcttcttagaagatctcaatt |
211 |
Q |
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| T |
43516458 |
aaggtaacaacgatttgggaggaaaggaaccttaaagtaaaaacacttcattgcttatagatgttgctcaatgatttcatcttcttagaagatctcaatt |
43516557 |
T |
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| Q |
212 |
ttataaggatcgaaaacatgtttaactccgattataaaagttagggttaaattaatgtttatcaaacaagtactagtcaagtatttataaaaattataaa |
311 |
Q |
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| T |
43516558 |
ttataaggatcgaaaacatggttaacttcaattataaatgttagggttaaattaatgtttatcaaacaagtactagtcaagtatttataaaaattataaa |
43516657 |
T |
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| Q |
312 |
cacattgttatttgtcttttttaccgtatacaataattgcatatgtgaagggagaaaaaagcccaatgcaaagaagttattgggaatttgtatgagaaga |
411 |
Q |
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| T |
43516658 |
cacattgttatttgtcttttttaccgtatacgataattgcatatgtgaagggagaaaaaagcccaatgcaaagaagttattgggaatttgtatgagaaga |
43516757 |
T |
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| Q |
412 |
agagtcagagggggagagtgtttggtggatggagaagt |
449 |
Q |
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| T |
43516758 |
agagtcagagggggagagtgtttggtggatggagaagt |
43516795 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 1683532 - 1683574
Alignment:
| Q |
195 |
cttagaagatctcaattttataaggatcgaaaacatgtttaac |
237 |
Q |
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| T |
1683532 |
cttaaaagatctcaattttataaggatcaaaaacatatttaac |
1683574 |
T |
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