View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18721_low_8 (Length: 435)
Name: NF18721_low_8
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18721_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 30652604 - 30653021
Alignment:
| Q |
17 |
cagatacacatacttaatacccacatgattaagtgaacaagaaaaggaaacatctatgttacatttgtatcgaccttttgctagcttttcctatcgaaca |
116 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
30652604 |
cagatacacatact-aatacccacatgattaagtgaacaagaaaaggaaacatctatgttacatttgtatcgaccttttgctggcttttcctatcgaaca |
30652702 |
T |
|
| Q |
117 |
acctcttggcgtattggttccaattgattcacagttctaggtgcgccaccctctcttctaatgccttgtgtagccttccactcattgaggagggtcgttg |
216 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30652703 |
acctcttggcgtattggtttctgctgattcacagttctaggtgcgccaccctctcttctaatgccttgtgtaggcttccactcattgaggagggtcgttg |
30652802 |
T |
|
| Q |
217 |
ctcgagcttaaacctgaccattgttttatgttttctgttgccataacttaagttcatacgcttccaaatactccacaagattgtggcaaagagagaactt |
316 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30652803 |
ctcgagttaaaacctgaccattgttttatgttttctgttgccataacttaagttcctacgcttccaaatactccacaagattgtggcaaagagagaactt |
30652902 |
T |
|
| Q |
317 |
tgagacatattaagttgagacaaaaggctaaaaatcaccgcatccatgttatagttttgccttaataccttgtcaatcttgtcccataaattaacctctc |
416 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
30652903 |
taagacatattaagttgagacaaaaggctaaaaatcaccgcatccatgttatagttttgccttaataccctgtcaatcttatcccataaattaacctctc |
30653002 |
T |
|
| Q |
417 |
gccaaatatgcatatcaca |
435 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
30653003 |
gccaaatatgcatatcaca |
30653021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 35 - 434
Target Start/End: Original strand, 14857333 - 14857733
Alignment:
| Q |
35 |
acccacatgattaagtgaacaagaaaaggaaacatctatgttacatttgtatcgaccttttgctagcttttcctatcgaacaacctcttggcgtattggt |
134 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| ||||||| || |||||||| |||||| ||||| |||||| | |||||| | |||||| || ||||| |
|
|
| T |
14857333 |
acccacacgattaagtgaagaagaaaaggaagcatctatattgcatttgtagcgacctcttgctggcttttgccatcgaatagtctcttgtcgaattggc |
14857432 |
T |
|
| Q |
135 |
tccaattgattcacagttctaggtgcgccaccctctcttctaatgccttgtgtagccttccactcattgaggagggtcgttgctcgagcttaaacctgac |
234 |
Q |
| |
|
||| |||||||||| ||||||||| || ||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
14857433 |
tccggctgattcacagctctaggtgcacctccctctcttcttatgcattgtgcggccttccactcatcaaggagggtcgttgctcgagctacaacttgac |
14857532 |
T |
|
| Q |
235 |
cattgttttatgttttctgttgccataacttaag-ttcatacgcttccaaatactccacaagattgtggcaaagagagaactttgagacatattaagttg |
333 |
Q |
| |
|
|||| | | ||| || ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14857533 |
tattggtctctgtcttttgttgccataacttaaggttcattcgtttccaaatactccacaagattgtggcaaagagagaactttgagacggattaagttg |
14857632 |
T |
|
| Q |
334 |
agacaaaaggctaaaaatcaccgcatccatgttatagttttgccttaataccttgtcaatcttgtcccataaattaacctctcgccaaatatgcatatca |
433 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||| ||| ||||||| || | |||||||| ||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
14857633 |
agacaagaggctaaaaatcattgcatccatgttataagttttccttaatgccctctcaatcttatcctataaattaacctctcgccaaagatgcacatca |
14857732 |
T |
|
| Q |
434 |
c |
434 |
Q |
| |
|
| |
|
|
| T |
14857733 |
c |
14857733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 60 - 430
Target Start/End: Complemental strand, 10215150 - 10214781
Alignment:
| Q |
60 |
aaggaaacatctatgttacatttgtatcgaccttttgctagcttttcctatcgaacaacctcttggcgtattggttccaattgattcacagttctaggtg |
159 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| | ||||| ||| ||||||||| | |||| | |
|
|
| T |
10215150 |
aaggaatcatctatattacatttgtatcggccttttgctagcttttcccatcgaacaacctcttgtcatattgtctccggctgattcacatctataggcg |
10215051 |
T |
|
| Q |
160 |
cgccaccctctcttctaatgccttgtgtagccttccactcattgaggagggtcgttgctcgagcttaaacctgaccattgttttatgttttctgttgcca |
259 |
Q |
| |
|
|||||| ||||||| || | ||| | |||| | ||||| | |||||||||| |||||||||| |||||||| ||||| | | ||||||||||| |
|
|
| T |
10215050 |
tgccaccttctcttcggatacattgcgcagccattcactcctcaaggagggtcgatgctcgagctaaaacctgatcattggtctccaccttctgttgcca |
10214951 |
T |
|
| Q |
260 |
taacttaagttcatacgcttccaaatactccacaagattgtggcaaagagagaactttgagacatattaagttgagacaaaaggctaaaaatcaccgcat |
359 |
Q |
| |
|
||| | | |||| |||| || ||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||||||| |||| |
|
|
| T |
10214950 |
taa-taaggttcttacgttttcaaatgctccacaagattgtggcaaagagagaactttgagacggattaggttgagacaagagactaaaaatcacagcat |
10214852 |
T |
|
| Q |
360 |
ccatgttatagttttgccttaataccttgtcaatcttgtcccataaattaacctctcgccaaatatgcata |
430 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
10214851 |
ccatgttatagtttagccttaatgccttgtcaatcttatcccataaattaacctctctccaaatatgcata |
10214781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 294 - 430
Target Start/End: Original strand, 24662833 - 24662969
Alignment:
| Q |
294 |
agattgtggcaaagagagaactttgagacatattaagttgagacaaaaggctaaaaatcaccgcatccatgttatagttttgccttaataccttgtcaat |
393 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||||| | |||||||| |||||||||| ||||||||||| |||||||||| ||| || | ||||| |
|
|
| T |
24662833 |
agattgtggcaaaaagagcactttgagacggattaagttaatacaaaaggttaaaaatcactacatccatgttaaagttttgcctcaatgccctatcaat |
24662932 |
T |
|
| Q |
394 |
cttgtcccataaattaacctctcgccaaatatgcata |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24662933 |
cttgtcccataaattaacctctcgccaaatattcata |
24662969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 8321466 - 8321564
Alignment:
| Q |
19 |
gatacacatacttaatacccacatgattaagtgaacaagaaaaggaaacatctatgttacatttgtatcgaccttttgctagcttttcctatcgaacaac |
118 |
Q |
| |
|
||||||||||| |||||| ||| |||||| |||| ||||||| ||||||| |||||||||||||||||||||| ||||| ||||| | |||||||||| |
|
|
| T |
8321466 |
gatacacatacc-aataccgacacgattaattgaagaagaaaatgaaacatttatgttacatttgtatcgacctcttgctgactttttccatcgaacaac |
8321564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 373
Target Start/End: Complemental strand, 27527081 - 27526981
Alignment:
| Q |
278 |
ttccaaatactccacaagattgtggcaaagagagaactttgagac--at---attaagttgagacaaaaggctaaaaatcacc-gcatccatgttatagt |
371 |
Q |
| |
|
|||||||||||||| || ||||||||||| |||| |||||||| | || |||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27527081 |
ttccaaatactccaaaatattgtggcaaacagagcactttgaggcggatcggattaagttga-acaaaaggctaaaaatcaccggcatccatgttatagt |
27526983 |
T |
|
| Q |
372 |
tt |
373 |
Q |
| |
|
|| |
|
|
| T |
27526982 |
tt |
27526981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University