View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18721_low_9 (Length: 434)
Name: NF18721_low_9
Description: NF18721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18721_low_9 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 416
Target Start/End: Original strand, 30653007 - 30653419
Alignment:
| Q |
7 |
aatatgcatatcacatgacactataaaagattatgaatattatcttcataattacttccacaaagcacacaatcaacgaaacaatgcatgccattgagat |
106 |
Q |
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|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30653007 |
aatatgcatatcacatgacactataaaagactacgaatattatcttcataattacttccacaaagcacacaatcaacgaaacaatgcatgccattgagat |
30653106 |
T |
|
| Q |
107 |
ctagtgggaaagcaccatctacaaacatgccataaaagattgttgatcttgggg-ggactttaagtttccaaataaaatgcaactacctaataaatgtaa |
205 |
Q |
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|||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
30653107 |
ctagtgggaaagcaccctctacaaacatgccatacaagattattgatcttgggggggactttaagtttccaaatcaaatgcaactacctgctaaatgtaa |
30653206 |
T |
|
| Q |
206 |
atgagaattatctgctaacacaaagtctatatgcattgtgcaccgaatacatgccgttcttttcagtttttaaaatcaatctatcttcatcaaccaacag |
305 |
Q |
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||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
30653207 |
atgcgaattatctgttaacacaaagtctatatgcattgtgcaccgaatacatgtcgttcttttcagttttgaaaatcaatttatcttcatcaaccaacag |
30653306 |
T |
|
| Q |
306 |
atgcaacaatgtatttaaaatcaattgagccgtgtttagatcaaacatattatatattaaaggagcattccatac--tatcaaactggttgatgatatcc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
30653307 |
atgcaacaatgtatttaaaatcaattgagccgtgtttagatcaaacatattatatattaaaggagcattacataccttatcaaattggttgatgatatcc |
30653406 |
T |
|
| Q |
404 |
ttcacctagacat |
416 |
Q |
| |
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||||||| ||||| |
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| T |
30653407 |
ttcaccttgacat |
30653419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 39649518 - 39649558
Alignment:
| Q |
42 |
aatattatcttcataattacttccacaaagcacacaatcaa |
82 |
Q |
| |
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|||| |||||||||||||||| |||||||| |||||||||| |
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| T |
39649518 |
aatactatcttcataattactaccacaaagaacacaatcaa |
39649558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 10214600 - 10214463
Alignment:
| Q |
220 |
ctaacacaaagtctatatgcattgtgcaccgaatacatgccgttcttttcagtttttaaaatcaatctatcttcatcaaccaacagatgcaacaatgtat |
319 |
Q |
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|||||||||||| |||||||| | ||||||||||||| || ||||||||| ||| |||||||| |||||| |||||||||| |||||||| |||| |
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| T |
10214600 |
ctaacacaaagtttatatgcacttcgcaccgaatacattccattcttttcaactttccaaatcaatttatcttaatcaaccaacggatgcaacggcgtat |
10214501 |
T |
|
| Q |
320 |
ttaaaatcaattgagccgtgtttagatcaaacatatta |
357 |
Q |
| |
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|||| |||| ||||||||| |||||||||||||||||| |
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| T |
10214500 |
ttaagatcatttgagccgtatttagatcaaacatatta |
10214463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 10214790 - 10214698
Alignment:
| Q |
7 |
aatatgcatatcac-atgacactataaaagattatgaatattatcttcataattacttccacaaagcacacaatcaacgaaacaatgcatgcc |
98 |
Q |
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|||||||||| ||| |||||||| ||||||| ||||||||||||||||| ||||||||| ||| | ||||||||||||| |||||||||||| |
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| T |
10214790 |
aatatgcatagcaccatgacactctaaaagaatatgaatattatcttcaaaattacttctacacaacacacaatcaacgggacaatgcatgcc |
10214698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 14857737 - 14857812
Alignment:
| Q |
23 |
gacactataaaagattatgaatattatcttcataattacttccacaaagcacacaatcaacgaaacaatgcatgcc |
98 |
Q |
| |
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|||||| ||| ||| ||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||| |
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| T |
14857737 |
gacactctaagagaatatgaatattatcttcaaaattacttccacaaagtacacaatcgacaggacaatgcatgcc |
14857812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 410
Target Start/End: Original strand, 14857897 - 14858094
Alignment:
| Q |
220 |
ctaacacaaagtctatatgcattgt--gcaccgaatacatgccgttcttttcagtttttaaaatcaatctatcttcatcaaccaacagatgcaacaatgt |
317 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||| || ||||||||| ||| |||||||| || |||||||||||||| |||||||| | | |
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| T |
14857897 |
ctaacacaaagtctatatgcactacacgcactgaatacataccattcttttcaactttccaaatcaatttaccttcatcaaccaacgaatgcaacagtat |
14857996 |
T |
|
| Q |
318 |
atttaaaatcaattgagccgtgtttagatcaaaca---tattatatattaaaggagcattccatac--tatcaaactggttgatgatatccttcacct |
410 |
Q |
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| | || || ||||||| || ||| ||||||||| ||| |||||| ||||| ||||||||||| ||||| |||| | ||||| |||||||||| |
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| T |
14857997 |
actcaagattaattgagttgtatttggatcaaacaaattataatatatgaaaggcgcattccataccttatcagactgttcaatgatgtccttcacct |
14858094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 12715638 - 12715675
Alignment:
| Q |
46 |
ttatcttcataattacttccacaaagcacacaatcaac |
83 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| |
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| T |
12715638 |
ttatcttcataattactaccacaaagaacacaatcaac |
12715675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 12776869 - 12776906
Alignment:
| Q |
46 |
ttatcttcataattacttccacaaagcacacaatcaac |
83 |
Q |
| |
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||||||||||||||||| |||||||| ||||||||||| |
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| T |
12776869 |
ttatcttcataattactaccacaaagaacacaatcaac |
12776906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 88634 - 88591
Alignment:
| Q |
39 |
atgaatattatcttcataattacttccacaaagcacacaatcaa |
82 |
Q |
| |
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||||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
88634 |
atgaatactatcttcataattactaccacaaagaacacaatcaa |
88591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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