View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18722_high_1 (Length: 604)

Name: NF18722_high_1
Description: NF18722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18722_high_1
NF18722_high_1
[»] chr7 (14 HSPs)
chr7 (156-375)||(16968483-16968702)
chr7 (372-585)||(16968189-16968402)
chr7 (187-372)||(16992132-16992317)
chr7 (13-111)||(16968741-16968839)
chr7 (476-585)||(16977105-16977214)
chr7 (379-458)||(16991962-16992041)
chr7 (183-323)||(17007925-17008050)
chr7 (13-93)||(10601676-10601756)
chr7 (187-281)||(16977814-16977908)
chr7 (187-254)||(10601817-10601884)
chr7 (13-67)||(16824362-16824416)
chr7 (484-585)||(10602456-10602557)
chr7 (218-275)||(16992331-16992388)
chr7 (28-93)||(17008113-17008178)
[»] chr4 (3 HSPs)
chr4 (258-375)||(35263168-35263285)
chr4 (381-466)||(35263339-35263424)
chr4 (187-274)||(35262998-35263085)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 3e-99; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 156 - 375
Target Start/End: Complemental strand, 16968702 - 16968483
Alignment:
Q  156 aacgggtgggccgaaatactattctgcggtggaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaat 255  Q
    |||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  16968702 aacgggtgagccgaaatactattatgcggtggaggagctggtgagagaggtaatggatagacaaagtggaatttctgagaggaatgatgaagaggtgaat 16968603  T
Q  256 gttgagaatagtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttctt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16968602 gttgagaatagtccatcttccacaaatattgatgagttggagcatgaagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttctt 16968503  T
Q  356 ctaaaccgaatggagtatca 375  Q
    |||| | |||||||||||||    
T  16968502 ctaagctgaatggagtatca 16968483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 372 - 585
Target Start/End: Complemental strand, 16968402 - 16968189
Alignment:
Q  372 atcaaagaacaaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaatttcatcagttcnnnnn 471  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  16968402 atcaaaaaacaaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaatttcatcagttcaaaaa 16968303  T
Q  472 nngaaagaagagatgaagaatgaatcaattgtgttggagttcaagtatgatgctgttgatcgacgagataggcagccaccactggttcctttggagacac 571  Q
      | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  16968302 aagcaagaagagatgaagaatgaatcaattgtgttggagttcaagtatgatgctgttgatcgacgagataggcagccaccactggttcctgtggagacac 16968203  T
Q  572 ccccatcgatatgg 585  Q
    ||||||||||||||    
T  16968202 ccccatcgatatgg 16968189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 187 - 372
Target Start/End: Complemental strand, 16992317 - 16992132
Alignment:
Q  187 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaatattg 286  Q
    |||||| ||||||||||||  | ||||| | ||||| ||||||||||||||||   |||| ||||  |   |||||  | ||||||||||||||||||||    
T  16992317 gaggagatggtgagagaggggaaggataaaaaaagtagaatttctgagaggaaatgtgaggaggtagagaatgagagcaatccatcttccacaaatattg 16992218  T
Q  287 atgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttctaaaccgaatggagta 372  Q
    ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  16992217 atgagttggagcaagccgaccatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttctaagctgaatggagta 16992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 16968839 - 16968741
Alignment:
Q  13 gaagaatatgagaccagtgatgaggattttagggttgatgagatgaatgagatttttggcaatgatgaagacaattcttctagttcctcttatgtgaat 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  16968839 gaagaaaatgagaccagtgatgaggattttagggttgatgagatgaatgagatttttggcaatgatgatgacaattcttctagttcctcttatttgaat 16968741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 476 - 585
Target Start/End: Complemental strand, 16977214 - 16977105
Alignment:
Q  476 aagaagagatgaagaatgaatcaattgtgttggagttcaagtatgatgctgttgatcgacgagataggcagccaccactggttcctttggagacaccccc 575  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||| ||  ||||||||||||||||||||||||||| ||||  | |||||||||||||    
T  16977214 aagaagagatgaagaatgaatcagttgtgttcgagttcaagtatgacgcctttgatcgacgagataggcagccaccaccggttattgtggagacaccccc 16977115  T
Q  576 atcgatatgg 585  Q
    ||||||||||    
T  16977114 atcgatatgg 16977105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 379 - 458
Target Start/End: Complemental strand, 16992041 - 16991962
Alignment:
Q  379 aacaaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaatttc 458  Q
    ||||||||||||||||||||||| || |||||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  16992041 aacaaatccaaggaaaatgttggcgactctgatggaggaaaagatcaatttgttaaaggcttagatgttggaggagtttc 16991962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 183 - 323
Target Start/End: Complemental strand, 17008050 - 17007925
Alignment:
Q  183 ggtggaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaat 282  Q
    ||||||| ||||| | |||||||| |||||||||||| ||||||||||||||| ||||||||||||               ||||||||||||||||| |    
T  17008050 ggtggagaagttgattagagaggtgatggatagacaatgtggaatttctgagaagaataatgagaa---------------tagtccatcttccacaagt 17007966  T
Q  283 attgatgagttggagcatgcagatcatgctagtgtttcctc 323  Q
    | |||||||||||| ||||||||||||||||||||||||||    
T  17007965 actgatgagttggaacatgcagatcatgctagtgtttcctc 17007925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 10601676 - 10601756
Alignment:
Q  13 gaagaatatgagaccagtgatgaggattttagggttgatgagatgaatgagatttttggcaatgatgaagacaattcttct 93  Q
    |||||| ||||||| || |||||||||||||| ||||||||| |||||||||||| || ||||||||| || | |||||||    
T  10601676 gaagaaaatgagactagcgatgaggattttagagttgatgagctgaatgagatttctgacaatgatgacgatagttcttct 10601756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 16977908 - 16977814
Alignment:
Q  187 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttccacaaa 281  Q
    ||||| ||||| |||||||| ||||||| |||||||||||||||||    |||| ||||| || | || ||||| ||||||||||||||||||||    
T  16977908 gaggatttggttagagaggtgatggataaacaaagtggaatttctggattgaatgatgaggagataaacgttgaaaatagtccatcttccacaaa 16977814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 10601817 - 10601884
Alignment:
Q  187 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaa 254  Q
    ||||| ||| ||||||||| ||| |||||||| | |||||||||||||| |||||||||| |||||||    
T  10601817 gaggaattgttgagagaggcaattgatagacacaatggaatttctgagatgaataatgaggaggtgaa 10601884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 16824416 - 16824362
Alignment:
Q  13 gaagaatatgagaccagtgatgaggattttagggttgatgagatgaatgagattt 67  Q
    |||||| ||||||| |||||||||||||||| ||| |||||| ||||||||||||    
T  16824416 gaagaaaatgagactagtgatgaggattttatggtggatgaggtgaatgagattt 16824362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 585
Target Start/End: Original strand, 10602456 - 10602557
Alignment:
Q  484 atgaagaatgaatcaattgtgttggagttcaagtatgatgctgttgatcgacgagataggcagccaccactggttcctttggagacacccccatcgatat 583  Q
    ||||||||||| |||| | |||| |||||  || | ||||  |||||||||| |||||  ||||||| || |||| || |||||||||||||||||||||    
T  10602456 atgaagaatgattcaactttgttcgagtttgaggaggatggcgttgatcgacaagatacacagccacaaccggtttctgtggagacacccccatcgatat 10602555  T
Q  584 gg 585  Q
    ||    
T  10602556 gg 10602557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 16992388 - 16992331
Alignment:
Q  218 aaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatcttc 275  Q
    |||| |||||||||||||| ||||||||| | || ||||||||||||||| |||||||    
T  16992388 aaaggggaatttctgagagtaataatgaggaagtaaatgttgagaatagttcatcttc 16992331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 17008178 - 17008113
Alignment:
Q  28 agtgatgaggattttagggttgatgagatgaatgagatttttggcaatgatgaagacaattcttct 93  Q
    |||||||| |||||||  ||||| ||| |||||||||||| || ||||||||| |||| |||||||    
T  17008178 agtgatgaagattttaaagttgaggagctgaatgagatttctgacaatgatgatgacagttcttct 17008113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 35263168 - 35263285
Alignment:
Q  258 tgagaatagtccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtaccattgagaagaagggtagttcttcttct 357  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35263168 tgagaatgttccatcttccacaaatattgatgagttggagcatgcagatcatgctagtgtttcctcctgtatcattgagaagaagggtagttcttcttct 35263267  T
Q  358 aaaccgaatggagtatca 375  Q
    |||| |||||||||||||    
T  35263268 aaactgaatggagtatca 35263285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 381 - 466
Target Start/End: Original strand, 35263339 - 35263424
Alignment:
Q  381 caaatccaaggaaaatgttggtgattctgatcgaggaaaatatcaatttgttaaaggcttagatgttggaggaatttcatcagttc 466  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  35263339 caaatccaaagaaaatgttggtgattctgatcgaggaaaagatcaatttgttaaaggcttagatgttggaggagtttcttcagttc 35263424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 187 - 274
Target Start/End: Original strand, 35262998 - 35263085
Alignment:
Q  187 gaggagttggtgagagaggtaatggatagacaaagtggaatttctgagaggaataatgagaaggtgaatgttgagaatagtccatctt 274  Q
    |||||| ||||||||||||  | ||||| | | ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  35262998 gaggagatggtgagagaggggaaggataaaaagagtggaatttctgagaggaataatgagaaagtaaatgttgagaatagtccatctt 35263085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University