View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18722_high_4 (Length: 384)
Name: NF18722_high_4
Description: NF18722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18722_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 55690871 - 55691193
Alignment:
| Q |
1 |
tatgggttgcatttataaattttgctgcttcaannnnnnn-gatcgatataagtttttatagggaaatattaatagttaaatatttaggagaggaaaaca |
99 |
Q |
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| T |
55690871 |
tatgggttgcatttataaattttgctgcttcaattttttttgatcgatataagtttttatagggaaatattaatagttaaatatttaggagaggaaaaaa |
55690970 |
T |
|
| Q |
100 |
tgttagtagttgagatttaattttagaactcctgcatataacacatttggtgccctaatccagattatgcatctgatagtttttggttttacatattttt |
199 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55690971 |
tgttagtagttgagatttaattttagacctcctgcatataacacatttggtgccctaatccagattatgcatctgatagtttttggttttacatattttt |
55691070 |
T |
|
| Q |
200 |
taggcagcatatggtctcttttgattaccaaacaactatcagatgaatcaacatttgtgttaattattttgtcatgatctttcctttatgactctagttc |
299 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
55691071 |
taggcagcatatggtctcttttgatcaccaaacaactatcagatgaatcaacatttgtgttaattattttgtcatgatctttccgttatgactctagttt |
55691170 |
T |
|
| Q |
300 |
ttccggtcatggcatagaatgaa |
322 |
Q |
| |
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||||||| |||||||| |||||| |
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| T |
55691171 |
ttccggttatggcatataatgaa |
55691193 |
T |
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