View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18722_low_2 (Length: 464)
Name: NF18722_low_2
Description: NF18722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18722_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 11003207 - 11003607
Alignment:
| Q |
18 |
acattagtaattcttatgagcagcagaaagggaactatattgtgtttggggacaaatctcttttggaattggctctgggagatgagtgtcgtatagagtt |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11003207 |
acattagtaattcttatgaacagcagaaagggaactatattgtgtttggggacaaatctcttttggaattggctctgggagatgagtgtcgtatagagtt |
11003306 |
T |
|
| Q |
118 |
gatgtttcttacatcttgggattttaagcatggtggcaacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11003307 |
gatgtttcttacatcttgggattttaagcatggtggaaacaacaacatttcttgtacggatattcatcgtatgatgttttatggatttgaactttcatgg |
11003406 |
T |
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| Q |
218 |
ctcaatagtctttgtaaacatggttggtattcagacatcctctattacaataaccaacgtcgtcgttgtgcacctttaggtaattttctccagacgactt |
317 |
Q |
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| T |
11003407 |
ctcaatagtctttgtaaacatggttggtattcagacatcctcgattacaataaccaacgtc------gtgcaccttcaggtaattttctccaaacgactt |
11003500 |
T |
|
| Q |
318 |
cctcaaagnnnnnnncttct--tctgtctgtgattgtagattagacgatgaggcagggagtagagggataattgtttaccatttataccatgtttaaaag |
415 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11003501 |
cctcaaagtttttttcttcttctctgtctgtgattgtagattagacgatgaggcagggagtagagggataattgttgaccatttataccatgtttaaaag |
11003600 |
T |
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| Q |
416 |
aaaatgt |
422 |
Q |
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||||||| |
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| T |
11003601 |
aaaatgt |
11003607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 11000230 - 11000532
Alignment:
| Q |
18 |
acattagtaattcttatgagcagcagaaagggaactatattgtgtttggggacaaatctcttttggaattggctctgggagatgagtgtcgtatagagtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||||| |||||||||||||| |
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| T |
11000230 |
acattagtaattcttatgagcagcagaaagggaactatattgtgtttggggacagatctcttttggaatttggtctaggagatggatgtcgtatagagtt |
11000329 |
T |
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| Q |
118 |
gatgtttcttacatcttgggattttaagcatggtggcaacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatgg |
217 |
Q |
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| T |
11000330 |
gatgtttcttacatcttggccttttgaacatggtggcaac---aacattttttgcacggatattcgtcgtatgatgttttatggatttgaactttcatgg |
11000426 |
T |
|
| Q |
218 |
ctcaatagtctttgtaaacatggttggtattcagacatcctctattacaataaccaacgtcgtcgttgtgcacctttaggtaattttctccagacgactt |
317 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |
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| T |
11000427 |
ctcaatagcctttgtaaacatggttggtattcagaaatcctcgattacaataaccaacgtcgtggttgtgcacgtttaggtaattttctccaaacgactt |
11000526 |
T |
|
| Q |
318 |
cctcaa |
323 |
Q |
| |
|
|||||| |
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| T |
11000527 |
cctcaa |
11000532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 11009172 - 11009082
Alignment:
| Q |
157 |
caacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtat |
247 |
Q |
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| T |
11009172 |
caacaacatttcttgtacagacattcgtcgtaggatgtattatggatttgaactttcttggctcaacagtcggtgtaaacatggtcggtat |
11009082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 11034576 - 11034495
Alignment:
| Q |
154 |
caacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaa |
235 |
Q |
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| T |
11034576 |
caacaacaacatttcttgcgcggatatccgtcgtgagatgttttatggatttgaactttcttggctcaacagtttttgtaaa |
11034495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 155 - 253
Target Start/End: Complemental strand, 10921708 - 10921610
Alignment:
| Q |
155 |
aacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtattcagac |
253 |
Q |
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|||||||||||||| || || || || |||||| ||| |||||||||||||||||||| |||||||| ||| |||||||| |||| |||||| ||||| |
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| T |
10921708 |
aacaacaacatttcatgcacagacatccgtcgtgagatcttttatggatttgaactttcttggctcaacagtttttgtaaagatggatggtatgcagac |
10921610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 252
Target Start/End: Complemental strand, 10975204 - 10975113
Alignment:
| Q |
161 |
aacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtattcaga |
252 |
Q |
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||||||||||| | ||| | ||||||||||||| ||||||||||||| |||| |||||||||||| |||| || |||||| ||||| |||| |
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| T |
10975204 |
aacatttcttgcaaggacttccgtcgtatgatgtattatggatttgaattttcttggctcaatagtatttgcaatcatggtcggtatgcaga |
10975113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 10905293 - 10905207
Alignment:
| Q |
161 |
aacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttggtat |
247 |
Q |
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| T |
10905293 |
aacatttcttgcaaggacttccgtcgtatgatgtattatggatttgaattttcttggctcaatagtatttacaatcatggttggtat |
10905207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 10988070 - 10987980
Alignment:
| Q |
154 |
caacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttgg |
244 |
Q |
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|||||| ||||||||||| ||||| || |||||||||| ||||||||||||| | || ||||||||||||||||||||| ||| |||| |
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| T |
10988070 |
caacaataacatttcttgcacggacatcaaccgtatgatgtcttatggatttgaagtctcttggctcaatagtctttgtaaagatgattgg |
10987980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 11019238 - 11019148
Alignment:
| Q |
154 |
caacaacaacatttcttgtacggatattcgtcgtatgatgttttatggatttgaactttcatggctcaatagtctttgtaaacatggttgg |
244 |
Q |
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|||||| ||||||||||| ||||| || |||||||||| ||||||||||||| | || ||||||||||||||||||||| ||| |||| |
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| T |
11019238 |
caacaataacatttcttgcacggacatcaaccgtatgatgtcttatggatttgaagtctcttggctcaatagtctttgtaaagatgattgg |
11019148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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