View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_high_13 (Length: 240)
Name: NF18723_high_13
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 44869256 - 44869030
Alignment:
| Q |
1 |
ctaaattactttttcctccataatggattttagcttgaagttgagattgaattcaaattaatatttttgaaatcaatttgaaattaaagacagaggaagc |
100 |
Q |
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| T |
44869256 |
ctaaattactttttcctccataatgaattttagcttgaagttgagattgaattcaaattaatatttttgaaatcaatttgaaattaaagacagaggaagc |
44869157 |
T |
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| Q |
101 |
cattgaaatttgaaaaacaataataacaaaaaacatcatactctgtgcaaaggattgattgtcagctgtgaagattatgttaaaaggacatgcgccattt |
200 |
Q |
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| T |
44869156 |
cattgaaatttgaaaaacaataataacaaaaaacatcatactctgtgcaaaggattgattgtcagctgtgaagattatgttaaaaggacatgcgccattt |
44869057 |
T |
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| Q |
201 |
ttcttgcacaacccggcaggaagttgc |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44869056 |
ttcttgcacaacccggcaggaagttgc |
44869030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 227
Target Start/End: Complemental strand, 44858547 - 44858458
Alignment:
| Q |
138 |
atactctgtgcaaaggattgattgtcagctgtgaagattatgttaaaaggacatgcgccatttttcttgcacaacccggcaggaagttgc |
227 |
Q |
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||||||||||||||||| |||||||| || ||||| | ||||||||| |||| | |||||| |||||||||| | | |||||||||| |
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| T |
44858547 |
atactctgtgcaaaggagtgattgtcggcggtgaaaagcatgttaaaacgacaggaagcattttccttgcacaacacagtaggaagttgc |
44858458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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