View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_high_14 (Length: 239)
Name: NF18723_high_14
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36752280 - 36752512
Alignment:
| Q |
1 |
caactaatctgaggacaaatcccaccatctactagcgggggcccaattgaagccaaagcaaagctctttatagacatgccaaatagaagac--tttgcac |
98 |
Q |
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| T |
36752280 |
caactaatctgaggacaaatcccaccatctactagcgggggcccaattgaagccaaagcaaagctctttatggacatgccaaatacaagactatttgcac |
36752379 |
T |
|
| Q |
99 |
ctggggattcaaacccgagacctagatagaagcacactctaagtctcaagccttcaccaccaggccaggc----------gggataaaaattcacattac |
188 |
Q |
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| T |
36752380 |
ctggggattctaacccgagacctagatagaagcacactctaagtctcaagccttcaccaccaggccaggcccacccctgggggataaaaattcacattac |
36752479 |
T |
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| Q |
189 |
acccctaatttctagtttctacaataccaaggc |
221 |
Q |
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| T |
36752480 |
acccctaatttctagtttctacaataccaaggc |
36752512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 38463959 - 38463895
Alignment:
| Q |
102 |
gggattcaaacccgagacctagatagaagcacact-ctaagtctcaagccttcaccaccaggcca |
165 |
Q |
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| T |
38463959 |
gggattcaaacctgagacctagagaggagcacactcctaggtcccaagccttcgccaccaggcca |
38463895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 28409264 - 28409314
Alignment:
| Q |
13 |
ggacaaatcccaccatctactagcgggggcccaattgaagccaaagcaaag |
63 |
Q |
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| T |
28409264 |
ggaccaatcccaccgtccactagtgggggcccaattgaagccaaagcaaag |
28409314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 34844530 - 34844481
Alignment:
| Q |
18 |
aatcccaccatctactagcgggggcccaattgaagccaaagcaaagctct |
67 |
Q |
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| T |
34844530 |
aatcccaccatccacttgcgggggcccatttaaagccatagcaaagctct |
34844481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 3835082 - 3835133
Alignment:
| Q |
115 |
gagacctagatagaagcacactc-taagtctcaagccttcaccaccaggcca |
165 |
Q |
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| T |
3835082 |
gagacctagagagaagcacactcctaagtcccaagccttcaccactaggcca |
3835133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 160
Target Start/End: Original strand, 30043599 - 30043654
Alignment:
| Q |
106 |
ttcaaacccgagacctagatagaagcacactctaa-gtctcaagccttcaccacca |
160 |
Q |
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| T |
30043599 |
ttcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccacca |
30043654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 3725679 - 3725740
Alignment:
| Q |
2 |
aactaatctg-aggacaaatcccaccatctactagcgggggcccaattgaagccaaagcaaa |
62 |
Q |
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|||||||||| ||||| ||||||||||| ||||||||||| |||| |||||| | ||||||| |
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| T |
3725679 |
aactaatctggaggaccaatcccaccatttactagcggggacccagttgaagtcgaagcaaa |
3725740 |
T |
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