View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_high_4 (Length: 428)
Name: NF18723_high_4
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 49520449 - 49520876
Alignment:
| Q |
1 |
caggaacaaaataaagcaaacaatcaatgttagtctctatgcacaattcgatgctcaaaaatgtaaattatgccaaatatatattataggattatttggc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49520449 |
caggaacaaaataaagcaaacaatcaatgttagtctctatgcacaattcgatgctcaaaaatgtaaattatgccaaatatatattataggattatttagc |
49520548 |
T |
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| Q |
101 |
atcttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtcaggcgctggttcctctggaggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520549 |
atcttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtcaggcgctggttcctctggaggag |
49520648 |
T |
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| Q |
201 |
tgtactctccatctttcttactctcccttttaccaagacaataaaatgtcaaataatcacgagggtgtgcttcaatgttcttcttttttatggcatcagc |
300 |
Q |
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| T |
49520649 |
tgtactctccatctttcttactctcccttttaccaagacaataaaatgtcaaataatcacgagggtgtgcttcaatgttcttcttttttatggcatcagc |
49520748 |
T |
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| Q |
301 |
aatctcagtatacatcatctccatggtccttctttgccaatctaatattgcctgaactgatgcactctcaggtataccttctggccacattggaatcacc |
400 |
Q |
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| T |
49520749 |
aatctcagtatacatcatctccatggtccttctttgccaatctaatattgcctgaactgatgcactctcaggtataccttctggccacattggaatcacc |
49520848 |
T |
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| Q |
401 |
acatacacgacaaacctctctccggctt |
428 |
Q |
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| T |
49520849 |
acatacacgacaaacctctctccggctt |
49520876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 103 - 396
Target Start/End: Original strand, 49509405 - 49509698
Alignment:
| Q |
103 |
cttacctatcatcatcttggaatgaacatagatcatgaatcttctagacttttgtgctctatgataatcactgtcaggcgctggttcctctggaggagtg |
202 |
Q |
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| T |
49509405 |
cttacctatcatcattttggcatgaacatatatcatgaatcttctagaattttgtgctctactataatcactgtcaggttctggtgcttctgtagaagta |
49509504 |
T |
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| Q |
203 |
tactc-tccatctttcttactctcccttttaccaagacaataaaatgtcaaataatcacgagggtgtgcttcaatgttcttcttttttatggcatcagca |
301 |
Q |
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| T |
49509505 |
tattcattcat-tttcttaccctctcggtttccaaggcaataaaatgacaagtaatctcttgggttggctctgatcccctttctttgaagggcttcagca |
49509603 |
T |
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| Q |
302 |
atctcagtatacatcatctccatggtccttctttgccaatctaatattgcctgaactgatgcactctcaggtataccttctggccacattggaat |
396 |
Q |
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| T |
49509604 |
atgtcagaatacatcatctccatagtccttctttgccaatctaatattgcttgaactgaagcactttcaggtataccttctggccacattggaat |
49509698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 44663162 - 44663124
Alignment:
| Q |
103 |
cttacctatcatcatcttggaatgaacatagatcatgaa |
141 |
Q |
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| T |
44663162 |
cttacctatcatcatcttggcatgaacatagatcatgaa |
44663124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 408
Target Start/End: Complemental strand, 44662954 - 44662857
Alignment:
| Q |
311 |
tacatcatctccatggtccttctttgccaatctaatattgcctgaactgatgcactctcaggtataccttctggccacattggaatcaccacatacac |
408 |
Q |
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| T |
44662954 |
tacatcatatccattgttctcctctgccagtctaatattgcctgaactgatgaactttctgggacaccctcaggccacatgggaaccacaacatacac |
44662857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 2415896 - 2415934
Alignment:
| Q |
103 |
cttacctatcatcatcttggaatgaacatagatcatgaa |
141 |
Q |
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| T |
2415896 |
cttacctatcatcatcttggtatgaacatatatcatgaa |
2415934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 5401783 - 5401739
Alignment:
| Q |
104 |
ttacctatcatcatcttggaatgaacatagatcatgaatcttcta |
148 |
Q |
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| T |
5401783 |
ttacctatcatgagcttggaatgaacataaaccatgaatcttcta |
5401739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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