View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_high_5 (Length: 426)
Name: NF18723_high_5
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 49521365 - 49520967
Alignment:
| Q |
18 |
aaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagca |
117 |
Q |
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| T |
49521365 |
aaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagca |
49521266 |
T |
|
| Q |
118 |
agttgggaagcaattcctattcccaattgaagtgcttgatagaattctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49521265 |
agttgggaagcaattcctattcccaattgaagtgcttgatagaattctaatccacccttctgatgcaatgctatcagaagaagatggcgaaacttggagt |
49521166 |
T |
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| Q |
218 |
gttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaagacaaca |
317 |
Q |
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| T |
49521165 |
gttcagttgtttagatccattgatggtggtgctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagtggaaaagacaaca |
49521066 |
T |
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| Q |
318 |
tcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatg |
416 |
Q |
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| T |
49521065 |
tcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcctatg |
49520967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 212 - 416
Target Start/End: Complemental strand, 49510025 - 49509821
Alignment:
| Q |
212 |
tggagtgttcagttgtttagatccattgatggtggagctgtttctaacttccctcaagcaccaaatgaagttatagaattaggccttgttagcggaaaag |
311 |
Q |
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| T |
49510025 |
tggaatgttcagttgtttagatcaatcgatgctggtgctgcttctggcttccctcaagatccaacagaagccgccgaaaaaggtcttgttactggaaaag |
49509926 |
T |
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| Q |
312 |
acaacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttc |
411 |
Q |
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| |||||||||||||||||||||||||||||||| ||||| ||||| ||| |||| || || |||||||||||||||||||||||||| ||||| ||||| |
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| T |
49509925 |
ataacatcattgatagaagcattcaagatgcctacataaacgctattcgacgagctaagaatttcatctacattgaaaatcagtattttctaggtagttc |
49509826 |
T |
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| Q |
412 |
ctatg |
416 |
Q |
| |
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|||| |
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| T |
49509825 |
atatg |
49509821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 49510222 - 49510108
Alignment:
| Q |
18 |
aaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttgagcagaggtgggaaaagca |
117 |
Q |
| |
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|||||||||||||||| || |||||||||||||| || || |||||||||||| |||| ||||||||||||| |||||||||||| || ||||||||||| |
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| T |
49510222 |
aaggtggtcctagagagccatggcatgatattcattgtaaactagaaggacctgttgcttgggatgtgttgtgcaattttgagcaaagatgggaaaagca |
49510123 |
T |
|
| Q |
118 |
agttgggaagcaatt |
132 |
Q |
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|||||| || ||||| |
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| T |
49510122 |
agttggaaaacaatt |
49510108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 314 - 417
Target Start/End: Original strand, 44662644 - 44662747
Alignment:
| Q |
314 |
aacatcattgatagaagcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcctagggagttcct |
413 |
Q |
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||||| || ||||| || ||||||||||| ||||| |||||||| ||| | ||||| || |||||||||||||||||||| |||||||| || |||| || |
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| T |
44662644 |
aacataatagataggagtattcaagatgcttatatcaatgctattcgacgcgcaaagaatttcatctacattgaaaatcaatatttccttggaagttgct |
44662743 |
T |
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| Q |
414 |
atgc |
417 |
Q |
| |
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|||| |
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| T |
44662744 |
atgc |
44662747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 44662351 - 44662438
Alignment:
| Q |
18 |
aaggtggtcctagagaaccgtggcatgatattcactgcaagctagaaggacctattgcatgggatgtgttgtacaattttgagcagag |
105 |
Q |
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||||||||||||| ||||| ||||||||||| |||| | ||| ||||| || ||||| |||||||| |||| || ||||||||||| |
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| T |
44662351 |
aaggtggtcctagggaaccttggcatgatatccactcaaggcttgaaggtcccattgcttgggatgttttgtttaactttgagcagag |
44662438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 402
Target Start/End: Complemental strand, 2416399 - 2416326
Alignment:
| Q |
329 |
agcattcaagatgcctatataaatgctatacgaagagcaaaaaacttcatctacattgaaaatcagtatttcct |
402 |
Q |
| |
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|||||||||||||| ||||| |||||||| || | ||||| ||||||||||| |||||||||||||||||||| |
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| T |
2416399 |
agcattcaagatgcttatattaatgctattcggcgtgcaaagaacttcatctatattgaaaatcagtatttcct |
2416326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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