View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_high_6 (Length: 337)
Name: NF18723_high_6
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 36752031 - 36751705
Alignment:
| Q |
1 |
ccaacaaacttgttcactggaaagacgagttcatatcaacattaaagcattactggttgggttgtaaactgctgtgggctgatgtgagaatcagttctag |
100 |
Q |
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| T |
36752031 |
ccaacaaacttgttcactggaaagacgagttcatatcaacattaaagcattactggttgggttgtaaactgctgtgggctgatgtgagaatcagttctag |
36751932 |
T |
|
| Q |
101 |
gttgttgttgaagcttgctaatgggaagagtctctctagaagggagagacagcaactgacgcgaactactgccgatatctttaggctagttcctgttgca |
200 |
Q |
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| T |
36751931 |
gttgttgttgaagcttgctaatgggaagagtctctctagaagggagagacagcaactgacgcgaactactgccgatatctttaggctagttcctgttgca |
36751832 |
T |
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| Q |
201 |
gttttcattattgtcccctttatggaattcctcttgcctgtgtttcttaaggtattccccaacatgttgccatcaacatttcaggacaagatgaaagaac |
300 |
Q |
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| T |
36751831 |
gttttcattattgtcccctttatggaattcctcttgcctgtgtttcttaaggtattccccaacatgttgccatcaacatttcaggacaagatgaaagaac |
36751732 |
T |
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| Q |
301 |
aggtaattactaagaatgtttgtgatg |
327 |
Q |
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| T |
36751731 |
aggtaattactaagaatgtttgtgatg |
36751705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 309
Target Start/End: Complemental strand, 30691942 - 30691699
Alignment:
| Q |
66 |
aaactgctgtgggctgatgtgagaatcagttctaggttgttgttgaagcttgctaatgggaagagtctctctagaagggagagacagcaactgacgcgaa |
165 |
Q |
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| T |
30691942 |
aaactactttgggctgatgttaggataagctccagattattgttaaaacttgccaatggaaagagtctttctagaagggagaggcagcaactcacgagga |
30691843 |
T |
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| Q |
166 |
ctactgccgatatctttaggctagttcctgttgcagttttcattattgtcccctttatggaattcctcttgcctgtgtttcttaaggtattccccaacat |
265 |
Q |
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| T |
30691842 |
caacaatcgatattttcaggctagttccttttgctgtatttatcatagttccattcatggagattctcttgccagtattcctgaaactgtttcccaacat |
30691743 |
T |
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| Q |
266 |
gttgccatcaacatttcaggacaagatgaaagaacaggtaatta |
309 |
Q |
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| T |
30691742 |
gctgccttccactttccaggataagatgaaagaacaggtaatta |
30691699 |
T |
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