View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_low_10 (Length: 299)
Name: NF18723_low_10
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 38 - 297
Target Start/End: Complemental strand, 33422610 - 33422349
Alignment:
| Q |
38 |
ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatctgtggtca |
137 |
Q |
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| T |
33422610 |
ttggcttgatgatatgtcgctaatgggaaaaataactttacttccagctgaagccttctttgtctgccatctcacaggaatttttctatatttgtggtca |
33422511 |
T |
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| Q |
138 |
atgtttgctttgggcacagcaacaataactgtatctttcttttcacctttcttgaagaaaatgactgttggaatacttcaaatcccataccgagtagctg |
237 |
Q |
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| T |
33422510 |
atg-ttgcttttggcacagcaccaataactgtatctttcttttcaccgttcttgaagaaaatgacagttggaatacttcgaatcccataccgagtagcaa |
33422412 |
T |
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| Q |
238 |
ttgaaggactttcatcagtat---gtttgtaacacttgagcttaccagcatattcctttgcta |
297 |
Q |
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| T |
33422411 |
ctgaaggactttcatcagtgttgagtttgtaacacttgagcttacccgcatattcctttgcta |
33422349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 274
Target Start/End: Complemental strand, 20543679 - 20543549
Alignment:
| Q |
147 |
ttgggcacagcaacaataactgtatctttcttttcacctttcttgaagaaaatgactgttggaatacttcaaatcccataccgagtagctgttgaaggac |
246 |
Q |
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| T |
20543679 |
ttgggcacagctccaataactgtgtcttttttctcaccatctttgaagatcataactgtcggaatacttcgaattccgtaccgggtagcagttgaaggac |
20543580 |
T |
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| Q |
247 |
tttcatcagtat---gtttgtaacacttgag |
274 |
Q |
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| T |
20543579 |
tctcatcggtattgagtttgtaacacttgag |
20543549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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