View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_low_16 (Length: 239)
Name: NF18723_low_16
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_low_16 |
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| [»] scaffold0114 (1 HSPs) |
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Alignment Details
Target: scaffold0114 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0114
Description:
Target: scaffold0114; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 13 - 219
Target Start/End: Complemental strand, 24727 - 24521
Alignment:
| Q |
13 |
aatatcactttttgtatctcggccatttatgcttccacaaactacatacatagaagacacctttggcaaactctagaaaacattcaaaaccaaatcaacc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24727 |
aatatcactttttgtatctcggccatttatgcttccacaaactacatacatagaagacacctttggcaaactctagaaaacattcaaaaccaaatcaacc |
24628 |
T |
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| Q |
113 |
ttccttggtgctcaataggagacttcaataccattcttggctcccatgaacatagaggtgcctcttttcctgcgaggggtcccattcttgacattgatgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24627 |
ttccttggtgctcaataggagacttcaataccattcttggctcccatgaacatagaggtgcctcttttcctgcgaggggtcccattcttgacattgatgt |
24528 |
T |
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| Q |
213 |
ccctggt |
219 |
Q |
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|| |||| |
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| T |
24527 |
ccatggt |
24521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 22630979 - 22631160
Alignment:
| Q |
13 |
aatatcactttttgtatctcggccatttatgcttccacaaactacatacatagaagacacctttggcaaactctagaaaacattcaaaaccaaatcaacc |
112 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||| ||||| ||| | |
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| T |
22630979 |
aataccactttttgtatttcggccatttacgcttccacaaattacatacatagaagacaactttggcagaccctagaaaacattcaaagccaaaccaatc |
22631078 |
T |
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| Q |
113 |
ttccttggtgctcaataggagacttcaataccattcttggctcccatgaacatagaggtgcctcttttcctgcgaggggtcc |
194 |
Q |
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| T |
22631079 |
ttccctggtgctcaataggagacttcaataccatccttggttcccatgaacacagaggtgcatctcttcctgcaaggggtcc |
22631160 |
T |
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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 166
Target Start/End: Complemental strand, 27738558 - 27738428
Alignment:
| Q |
36 |
catttatgcttccacaaactacatacatagaagacacctttggcaaactctagaaaacattcaaaaccaaatcaaccttccttggtgctcaataggagac |
135 |
Q |
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||||||||||||||| ||||| | ||||| ||||| || ||| |||| || | ||| | ||||||||| |||||| ||||||||||||||||||||| |
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| T |
27738558 |
catttatgcttccaccaactatacacatatgagacatctctggaaaaccttacagaacctacaaaaccaatccaacctcccttggtgctcaataggagac |
27738459 |
T |
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| Q |
136 |
ttcaataccattcttggctcccatgaacata |
166 |
Q |
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|| || |||||| | ||||| |||||||||| |
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| T |
27738458 |
tttaacaccattataggctctcatgaacata |
27738428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 146
Target Start/End: Original strand, 9213978 - 9214090
Alignment:
| Q |
34 |
gccatttatgcttccacaaactacatacatagaagacacctttggcaaactctagaaaacattcaaaaccaaatcaaccttccttggtgctcaataggag |
133 |
Q |
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||||| ||||||||||| |||||||||||||| ||||| || |||||||| ||| |||| ||||||||||| ||| | ||||||||||| || || | |
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| T |
9213978 |
gccatatatgcttccaccaactacatacataggagacaactctggcaaaccctaacaaaccttcaaaaccaatacaatttaccttggtgctctattggtg |
9214077 |
T |
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| Q |
134 |
acttcaataccat |
146 |
Q |
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| T |
9214078 |
atttcaacaccat |
9214090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 26978674 - 26978590
Alignment:
| Q |
86 |
tagaaaacattcaaaaccaaatcaaccttccttggtgctcaataggagacttcaataccattcttggctcccatgaacatagagg |
170 |
Q |
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| T |
26978674 |
tagaaaaccttcaaaatcaatccaaccttccctggtgcacgataggagacttcaatactattattggctctcatgagcacagagg |
26978590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 26233087 - 26233015
Alignment:
| Q |
89 |
aaaacattcaaaaccaaatcaaccttccttggtgctcaataggagacttcaataccattcttggctcccatga |
161 |
Q |
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||||||| ||||| ||| |||| | || ||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
26233087 |
aaaacatccaaaatcaacacaacataccctggtgctcaattggggacttcaataccattcttggttcccatga |
26233015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 28691705 - 28691624
Alignment:
| Q |
89 |
aaaacattcaaaaccaaatcaaccttccttggtgctcaataggagacttcaataccattcttggctcccatgaacatagagg |
170 |
Q |
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||||||| ||||||||| |||| |||| |||||||| |||||||| |||||| |||| | || || |||||||||||||| |
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| T |
28691705 |
aaaacatccaaaaccaacacaacattccctggtgctccataggagatttcaatgccatcttaggatctcatgaacatagagg |
28691624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 17966167 - 17966086
Alignment:
| Q |
89 |
aaaacattcaaaaccaaatcaaccttccttggtgctcaataggagacttcaataccattcttggctcccatgaacatagagg |
170 |
Q |
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||||||| ||||||||| |||| |||| |||||||| |||||||| |||||| |||| | || || |||||||||||||| |
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| T |
17966167 |
aaaacatccaaaaccaacacaacattccctggtgctccataggagatttcaatgccatcttaggatctcatgaacatagagg |
17966086 |
T |
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