View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18723_low_17 (Length: 233)
Name: NF18723_low_17
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_low_17 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 18413797 - 18414012
Alignment:
| Q |
18 |
cacattagcgattacacaaaaacccaattcattggaaataaacttgattgtattcattatacaactaaaaaccaaagacgatgttaagtccgaactacgg |
117 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||| |
|
|
| T |
18413797 |
cacatcagcgatcgcacaaaaacccaattcatttgatataaacttgattgtattcattatacaactaaaaaccgaagacgatgttacgtccaaactacgg |
18413896 |
T |
|
| Q |
118 |
tgatttcttattctttaccaattttaggtattatagacaaccttacttttattgtgcatttgttcattttaaatagggtcatgctaacatgtatattaag |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18413897 |
tgatttcttattctttatcaattttaggtattatagacaaccttacttttattgtgcatttgatcattttaaatagggtcatgctaacatgtatattaag |
18413996 |
T |
|
| Q |
218 |
agaatatgttaaagat |
233 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
18413997 |
agaacatgttaaagat |
18414012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University