View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18723_low_19 (Length: 230)

Name: NF18723_low_19
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18723_low_19
NF18723_low_19
[»] chr4 (17 HSPs)
chr4 (93-214)||(36369223-36369344)
chr4 (93-214)||(36387802-36387923)
chr4 (93-212)||(36433851-36433970)
chr4 (4-77)||(36425833-36425906)
chr4 (93-213)||(36373842-36373962)
chr4 (1-77)||(36404350-36404426)
chr4 (4-77)||(36411667-36411740)
chr4 (4-77)||(36416998-36417071)
chr4 (93-214)||(36425994-36426115)
chr4 (1-77)||(36397417-36397493)
chr4 (97-213)||(36397585-36397701)
chr4 (1-66)||(36373678-36373743)
chr4 (1-77)||(36369059-36369135)
chr4 (1-76)||(36387637-36387712)
chr4 (93-214)||(36404514-36404635)
chr4 (93-211)||(36411828-36411946)
chr4 (93-211)||(36417159-36417277)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 36369223 - 36369344
Alignment:
Q  93 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 192  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||||||||  ||||  |||||||  |||| ||||||||||| ||| |||||||||    
T  36369223 tggagaagggtttgtcaaagttgtgagcttgaaagttcccgatacatctgtggcggttgctaaaggtggtttgagtttggaagaatgtgagaaagaatgc 36369322  T
Q  193 ttaagaaactgctcttgtactg 214  Q
    || |||||||||||||||||||    
T  36369323 ttgagaaactgctcttgtactg 36369344  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 36387802 - 36387923
Alignment:
Q  93 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 192  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||  ||| |||  |||| ||||||||||| ||| |||||||||    
T  36387802 tggagaagggtttatcaaagttgtaagcttgaaagttcctgatacatctgtggcagttgctaaaagtggtttgagtttggaagaatgtgagaaagaatgc 36387901  T
Q  193 ttaagaaactgctcttgtactg 214  Q
    ||   |||||| ||||||||||    
T  36387902 ttgcaaaactgttcttgtactg 36387923  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 93 - 212
Target Start/End: Original strand, 36433851 - 36433970
Alignment:
Q  93 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 192  Q
    ||||||||||||| ||||| |||| |||||||| ||||||||||||||  ||| |  || ||||||||  |||| ||||||||||| |||||||||||||    
T  36433851 tggagaagggtttatcaaaattgtcagcttgaaagttcctgatacatcgatggcaaatgccaaaggtggtttgagtttggaagaatgtgaaaaagaatgc 36433950  T
Q  193 ttaagaaactgctcttgtac 212  Q
    || |||||||| ||||||||    
T  36433951 ttcagaaactgttcttgtac 36433970  T

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Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 36425833 - 36425906
Alignment:
Q  4 ggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggttt 77  Q
    |||| |||||||| ||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36425833 ggaacatgtggatcaaatagtaattgtgaccctttgaactttgagaactttaagtgtacttgtttacttggttt 36425906  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 36373842 - 36373962
Alignment:
Q  93 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 192  Q
    ||||||||||||| ||||||||| ||||||||| |||||||||| |||||||| ||||   |||||||   ||| |||||||||||  ||  ||||||||    
T  36373842 tggagaagggtttatcaaagttgcaagcttgaaagttcctgatatatctgtggcagttactaaaggtggtctgagtttggaagaatgcgaggaagaatgc 36373941  T
Q  193 ttaagaaactgctcttgtact 213  Q
    || ||||||||||||||||||    
T  36373942 ttgagaaactgctcttgtact 36373962  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36404350 - 36404426
Alignment:
Q  1 tatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggttt 77  Q
    ||||||| |||||||| |||||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||||    
T  36404350 tatggaacatgtggatcaaacagtaattgtgacccttttaactttgacgactttaagtgcacttgtttacttggttt 36404426  T

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Target: chr4; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 36411667 - 36411740
Alignment:
Q  4 ggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggttt 77  Q
    |||| |||||||  |||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  36411667 ggaacatgtggaccaaacagtaattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggttt 36411740  T

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Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 36416998 - 36417071
Alignment:
Q  4 ggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggttt 77  Q
    |||| |||||||  |||||||||| ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  36416998 ggaacatgtggaccaaacagtaattgtgaccctttgaactttgagagctttaagtgtacttgtttacttggttt 36417071  T

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Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 36425994 - 36426115
Alignment:
Q  93 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 192  Q
    ||||||||||||| |||||||||||||| | || |||||||| || |||  || ||||| || || ||  ||||||||||| |||| ||| |||||||||    
T  36425994 tggagaagggtttatcaaagttgtaagcgtaaaagttcctgaaacgtctacggcagttgccatagatggtttgaatttggatgaatgtgagaaagaatgc 36426093  T
Q  193 ttaagaaactgctcttgtactg 214  Q
    || |||||||||||||||||||    
T  36426094 ttgagaaactgctcttgtactg 36426115  T

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Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36397417 - 36397493
Alignment:
Q  1 tatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggttt 77  Q
    |||||||  ||||||| |||||||||| |||||||||||||||||||| |||||||||| || ||||||||||||||    
T  36397417 tatggaacgtgtggatcaaacagtaattgtgaccctttgaactttgagaactttaagtgcacgtgtttacttggttt 36397493  T

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Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 36397585 - 36397701
Alignment:
Q  97 gaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgcttaa 196  Q
    ||||||||| ||||||||||||||||||| |||||||||| ||||| || ||||  || || ||  |||| |||||| |||| ||| ||||||||||| |    
T  36397585 gaagggtttatcaaagttgtaagcttgaaagttcctgatatatctggggcagttaccatagatggtttgagtttggatgaatgtgagaaagaatgcttga 36397684  T
Q  197 gaaactgctcttgtact 213  Q
    |||||||||| ||||||    
T  36397685 gaaactgctcctgtact 36397701  T

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Target: chr4; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 36373678 - 36373743
Alignment:
Q  1 tatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgt 66  Q
    |||||||  ||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  36373678 tatggaacctgtggatcaaacagtaactgtgaccctttgaactttgaggactttaagtgtacttgt 36373743  T

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Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 36369059 - 36369135
Alignment:
Q  1 tatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggttt 77  Q
    |||||||  ||||||| |||||||||| |||||| ||| |||||||| ||||||||||| |||||||||||||||||    
T  36369059 tatggaacctgtggatcaaacagtaattgtgacctttttaactttgaagactttaagtgcacttgtttacttggttt 36369135  T

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Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36387637 - 36387712
Alignment:
Q  1 tatggaatatgtggattaaacagtaatcgtgaccctttgaactttgaggactttaagtgtacttgtttacttggtt 76  Q
    ||||||| |||||||| |||  ||||| |||||||||| |||||||| |||||||||||| |||||||||||||||    
T  36387637 tatggaacatgtggatcaaatggtaattgtgacccttttaactttgatgactttaagtgttcttgtttacttggtt 36387712  T

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Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 36404514 - 36404635
Alignment:
Q  93 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 192  Q
    ||||||||||||| | |||||||||||  |||| ||| |||||| |||||  | ||||| || || ||  |||| ||||||||||| ||| |||||||||    
T  36404514 tggagaagggtttataaaagttgtaagtgtgaaagttgctgatatatctggagcagttgccatagatggtttgagtttggaagaatgtgagaaagaatgc 36404613  T
Q  193 ttaagaaactgctcttgtactg 214  Q
    || ||||| |||||||||||||    
T  36404614 ttgagaaattgctcttgtactg 36404635  T

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Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 36411828 - 36411946
Alignment:
Q  93 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 192  Q
    |||||||||||||  ||||||| ||||  |||| |||||||||| ||||| || ||||| || || ||  |||| ||||||||||| ||| ||||| |||    
T  36411828 tggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggtttgactttggaagaatgtgagaaagattgc 36411927  T
Q  193 ttaagaaactgctcttgta 211  Q
    || |||||||| |||||||    
T  36411928 ttgagaaactgttcttgta 36411946  T

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Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 211
Target Start/End: Original strand, 36417159 - 36417277
Alignment:
Q  93 tggagaagggtttgtcaaagttgtaagcttgaaggttcctgatacatctgtggaagttgacaaaggtgacttgaatttggaagaatatgaaaaagaatgc 192  Q
    |||||||||||||  ||||||| ||||  |||| |||||||||| ||||| || ||||| || || ||  |||| ||||||||||| ||| ||||| |||    
T  36417159 tggagaagggtttaacaaagttttaagggtgaaagttcctgatatatctggggcagttgccatagatggtttgactttggaagaatgtgagaaagattgc 36417258  T
Q  193 ttaagaaactgctcttgta 211  Q
    || |||||||| |||||||    
T  36417259 ttgagaaactgttcttgta 36417277  T

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