View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18723_low_2 (Length: 529)
Name: NF18723_low_2
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_low_2 |
 | |
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| [»] scaffold0341 (2 HSPs) |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: scaffold0341 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 73 - 529
Target Start/End: Original strand, 11595 - 12051
Alignment:
| Q |
73 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
11595 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
11694 |
T |
|
| Q |
173 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
272 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11695 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
11794 |
T |
|
| Q |
273 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11795 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagt |
11894 |
T |
|
| Q |
373 |
aatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11895 |
aatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccttccttccaatttctccatg |
11994 |
T |
|
| Q |
473 |
cctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttc |
529 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11995 |
cctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttc |
12051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 73 - 529
Target Start/End: Original strand, 3939 - 4395
Alignment:
| Q |
73 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3939 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
4038 |
T |
|
| Q |
173 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
272 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4039 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
4138 |
T |
|
| Q |
273 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4139 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagt |
4238 |
T |
|
| Q |
373 |
aatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatg |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
4239 |
aatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatg |
4338 |
T |
|
| Q |
473 |
cctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttc |
529 |
Q |
| |
|
||| |||||||||| ||| ||||| ||| | ||| |||||||||||||| |||||| |
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|
| T |
4339 |
cctacacaaatttatccagatgcatatatcattctatgttagatataattccacttc |
4395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 73 - 529
Target Start/End: Original strand, 6509915 - 6510371
Alignment:
| Q |
73 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatgattaaaattccagctagc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
6509915 |
ccactatttaattacaatctggtctggtatttacaacactatgaaatatatatgtattatgggtatcacggtcattccaatggttaaaattccagctagc |
6510014 |
T |
|
| Q |
173 |
aaggaaatagctctgtgtttgaagcgccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
272 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6510015 |
aaggaaatagctctgtgtttgaggccccgttgaccgataattcttgagctgagcttggcgggttcgtatcttgaaagtcactccaatccatatgaaatgc |
6510114 |
T |
|
| Q |
273 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6510115 |
aggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagt |
6510214 |
T |
|
| Q |
373 |
aatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatg |
472 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||||||||||||| | || ||||||||| |||||||||| || || ||||||||||||||| |
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|
| T |
6510215 |
aatccaatatgaatacatctaaaaatttcatttcgtgaatcattgtttaaagtagaatctatgataattgttgcagtaccatcaatccaatttctccatg |
6510314 |
T |
|
| Q |
473 |
cctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttc |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510315 |
cctgcacaaatttacccaaatgcaaatactactctttgttagatataatttcacttc |
6510371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 258 - 500
Target Start/End: Original strand, 6497114 - 6497356
Alignment:
| Q |
258 |
atccatatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattc |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
6497114 |
atccatatgaaatgcaggttccaaaggcattgggagagtaactgaatcactatttagcatcactactacagtagccatgcttggcctgctagctacattc |
6497213 |
T |
|
| Q |
358 |
tcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttcct |
457 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||| | | ||||||||| |||||||||| || |||| |
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|
| T |
6497214 |
tcttgaacacaaagtaatccaatatgtatacatctcaacatttcatttcgtgaatcattgtttaacgtgggatctatgatacttgttgcagttccctcct |
6497313 |
T |
|
| Q |
458 |
tccaatttctccatgcctgcacaaatttacccaaatgcaaata |
500 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
6497314 |
tccaattcctccatgcctgcacaaatttgtccaaacgcaaata |
6497356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 280 - 529
Target Start/End: Original strand, 6502468 - 6502717
Alignment:
| Q |
280 |
aaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaa |
379 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||| |||| || | ||| |||||||||||||||||||||||||| |
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|
| T |
6502468 |
aaaggcattggaagagtaacagagtcgctattaagcatcactacaatagaagccatggttggtctatttactatattctcttgaacacaaagtaatccaa |
6502567 |
T |
|
| Q |
380 |
tatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttccaatttctccatgcctgcac |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||| |
|
|
| T |
6502568 |
tatggatacatcttagtatttcatttcgtgaatcattgtttaatgtcgagtctatgatatttgttgcagtcccctctctccaatttctccatgcctacac |
6502667 |
T |
|
| Q |
480 |
aaatttacccaaatgcaaatactactctttgttagatataatttcacttc |
529 |
Q |
| |
|
||||||| ||| ||||| ||| | ||| |||||||||||||| |||||| |
|
|
| T |
6502668 |
aaatttatccagatgcatatatcattctatgttagatataattccacttc |
6502717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 262 - 484
Target Start/End: Original strand, 6514468 - 6514690
Alignment:
| Q |
262 |
atatgaaatgcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctctt |
361 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
6514468 |
atatgaaatgcaggttgcaaaggaattgggagagtaacagaagggctattaagcgtcactacaacagaagccatggttggtctgctagctacattctctt |
6514567 |
T |
|
| Q |
362 |
gaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaatcattgtttaatatcgagtctatgatatttgttgcagtcccttccttcca |
461 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||| |||| |||||||||||| | | ||||||||||||| ||||||||| |||||||| |
|
|
| T |
6514568 |
gaacacaaagtaatccaatatggatacatctcattatctcatttagtgagtcattgtttaatgttggatctatgatatttgctgcagtcccctccttcca |
6514667 |
T |
|
| Q |
462 |
atttctccatgcctgcacaaatt |
484 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
6514668 |
atttctccatgcctacacaaatt |
6514690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 291 - 423
Target Start/End: Complemental strand, 6526011 - 6525879
Alignment:
| Q |
291 |
gagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaatatggatacat |
390 |
Q |
| |
|
|||||| | ||||| |||||||||||| | ||||| ||||||||| |||||||||||||| |||| ||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
6526011 |
gagagtgagagaatgactattaagcattagtacaatagaagccatagttggcctgctagctgcattttcttgaacacaaagtaacccaatgtggatgcat |
6525912 |
T |
|
| Q |
391 |
cttagtatttcatttcgtgaatcattgtttaat |
423 |
Q |
| |
|
|| | |||||| || |||||||||||||||| |
|
|
| T |
6525911 |
ctcattatttcgttcactgaatcattgtttaat |
6525879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 423
Target Start/End: Complemental strand, 47771667 - 47771525
Alignment:
| Q |
281 |
aaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaat |
380 |
Q |
| |
|
|||| |||| |||||| | ||||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| ||||| |
|
|
| T |
47771667 |
aaggtattgagagagtgagagaataactattaagcatgagtgcaacagtagccatggttggtctgtcaactacattttcttgaacacaaagtaagccaat |
47771568 |
T |
|
| Q |
381 |
atggatacatcttagtatttcatttcgtgaatcattgtttaat |
423 |
Q |
| |
|
|||||| ||||| | |||||||||| |||| |||||||||| |
|
|
| T |
47771567 |
atggatgcatctcattatttcatttgctgaaatattgtttaat |
47771525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 281 - 423
Target Start/End: Complemental strand, 47775819 - 47775677
Alignment:
| Q |
281 |
aaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttggcctgctagctacattctcttgaacacaaagtaatccaat |
380 |
Q |
| |
|
|||| |||| |||||| | ||||| |||||||||||| | | |||||| ||||||| |||| ||| | ||||||| ||||||||||||||||| |||| |
|
|
| T |
47775819 |
aaggtattgagagagtgagagaataactattaagcatgagtgcaacagcagccatggttggtctgtcaactacattttcttgaacacaaagtaaggcaat |
47775720 |
T |
|
| Q |
381 |
atggatacatcttagtatttcatttcgtgaatcattgtttaat |
423 |
Q |
| |
|
|||||||||||| | |||||||||| |||| |||||||||| |
|
|
| T |
47775719 |
atggatacatctcattatttcatttgctgaaatattgtttaat |
47775677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 27367905 - 27367975
Alignment:
| Q |
271 |
gcaggttccaaaggcattgggagagtaacagaatcactattaagcatcactacaacagaagccatgcttgg |
341 |
Q |
| |
|
||||||| | |||| |||| ||||| || ||||| |||||||||||| ||| |||||||||||||| |||| |
|
|
| T |
27367905 |
gcaggtttcgaaggtattgagagagcaagagaataactattaagcatgactgcaacagaagccatggttgg |
27367975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 411
Target Start/End: Original strand, 28843804 - 28843869
Alignment:
| Q |
346 |
ctagctacattctcttgaacacaaagtaatccaatatggatacatcttagtatttcatttcgtgaa |
411 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||| || ||||| | |||||||||| |||| |
|
|
| T |
28843804 |
ctagctacattgtcttgcacacaaagtaacccaatatgaatgcatctcatgatttcatttcttgaa |
28843869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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