View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_low_21 (Length: 226)
Name: NF18723_low_21
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 21 - 208
Target Start/End: Original strand, 42251199 - 42251383
Alignment:
| Q |
21 |
ttaatagaggtaaaaccataattaaaatgatnnnnnnnnnncaatataacttaagaatatgcatcaatttttctttatcagtctcatcttttaattttta |
120 |
Q |
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| T |
42251199 |
ttaatagaggtaaaaccataattaaaatgataaaaaaa---caattaaatttaagaatatgcatcaatttttctttatcagtctcatcttctaattttta |
42251295 |
T |
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| Q |
121 |
ctttcttgctatattctatcaaattaaacttaagaagagaaaattactcccctgatgattttgttcctaaaatttatacttcttcaac |
208 |
Q |
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| T |
42251296 |
ctttcttgctatattcgatcaaattaaacttaagaagagaaaattactcccctgataattttgttcctaaaatttatacttcttcaac |
42251383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 68 - 172
Target Start/End: Original strand, 5487168 - 5487272
Alignment:
| Q |
68 |
aacttaagaa-tatgcatcaatttttctttatcagtctcatcttttaatttttactttcttgctatattctatcaaattaaactt-aagaagagaaaatt |
165 |
Q |
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|||||||||| ||||||||||||||| |||||||| ||||||| || |||||||||||||||||||||| |||||||||||||| || ||||||||||| |
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| T |
5487168 |
aacttaagaactatgcatcaattttt--ttatcagtttcatcttctattttttactttcttgctatattcaatcaaattaaacttaaaaaagagaaaatt |
5487265 |
T |
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| Q |
166 |
actcccc |
172 |
Q |
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|||||| |
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| T |
5487266 |
cctcccc |
5487272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 68 - 208
Target Start/End: Complemental strand, 11677693 - 11677554
Alignment:
| Q |
68 |
aacttaagaa-tatgcatcaatttttctttatcagtctcatcttttaatttttactttcttgctatattctatcaaattaaacttaagaagagaaaatta |
166 |
Q |
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|||||||||| ||||||||||||||| |||||||| ||||||| || ||||||||||||| |||||||| |||||||||||||||| |||||||||||| |
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| T |
11677693 |
aacttaagaactatgcatcaattttt--ttatcagtttcatcttctattttttactttcttactatattcaatcaaattaaacttaaaaagagaaaatta |
11677596 |
T |
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| Q |
167 |
ctcccctgatgattttgttcctaaaatttatacttcttcaac |
208 |
Q |
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|||||| || ||||||||||||||||||||||||||||||| |
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| T |
11677595 |
ctccccctataattttgttcctaaaatttatacttcttcaac |
11677554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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