View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_low_23 (Length: 205)
Name: NF18723_low_23
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 26812198 - 26812096
Alignment:
| Q |
94 |
aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca |
193 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| || |
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| T |
26812198 |
aagtcccacaatagggtgatcagcaacttctaaaagaccacggttgatctttttggaaatctctgtaactatcttcttaataaactcatattcatatgca |
26812099 |
T |
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| Q |
194 |
tct |
196 |
Q |
| |
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||| |
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| T |
26812098 |
tct |
26812096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 26618310 - 26618208
Alignment:
| Q |
94 |
aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca |
193 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
26618310 |
aagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgtaactatcttcttaataaactcgtattcatattca |
26618211 |
T |
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| Q |
194 |
tct |
196 |
Q |
| |
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||| |
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| T |
26618210 |
tct |
26618208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 94 - 196
Target Start/End: Complemental strand, 26724238 - 26724136
Alignment:
| Q |
94 |
aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca |
193 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
26724238 |
aagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgtaactatcttcttaataaactcgtattcatattca |
26724139 |
T |
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| Q |
194 |
tct |
196 |
Q |
| |
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||| |
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| T |
26724138 |
tct |
26724136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 27664733 - 27664811
Alignment:
| Q |
113 |
tcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatatt |
191 |
Q |
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|||||||| | |||| ||| |||||||||||||||||| | ||||||||||| |||| |||||| | |||||||||| |
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| T |
27664733 |
tcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaatttgtattcatatt |
27664811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 26136553 - 26136463
Alignment:
| Q |
102 |
caacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattc |
192 |
Q |
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|||| |||||||| ||||| | ||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||||||| ||||| |
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| T |
26136553 |
caacggggtgatcggcaacatgtaaaagaacacggttgatcttgtttgaaatcactgtaactatcttcttaataaactcatattcgtattc |
26136463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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