View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18723_low_3 (Length: 431)
Name: NF18723_low_3
Description: NF18723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18723_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 13333693 - 13334093
Alignment:
| Q |
18 |
cgttagattatgagttcccagagaaatcatccgatggtggattccttggacttttcgataaagaatccgccttcaatacctcgcaaaacttgattgttgc |
117 |
Q |
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| T |
13333693 |
cgttagattatgagttcccagagaaatcatccgatggtggattccttggacttttcgataaagaatccgcgttcaatacctcccaaaactccattgttgc |
13333792 |
T |
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| Q |
118 |
ggttgagtttgatagttttagaaatgaatgggatcctcaaatcgcaggtaactcacctcatataggaatcgacatcaacacgattaggtcttcagctact |
217 |
Q |
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| T |
13333793 |
ggttgagtttgatagttttagaaatgaatgggatcctcaaatcgcaggtaactcacctcatataggaatcgacatcaacacgattaggtcttcagctact |
13333892 |
T |
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| Q |
218 |
gctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagttataatcctgcctcgaaaaaattgactgcgctggtaacttatc |
317 |
Q |
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| T |
13333893 |
gctctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagttataatcctgcctcgaaaaaattgactgcgctggtaacttatc |
13333992 |
T |
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| Q |
318 |
taaatggtcctgtcatagaggaaactgctgtatcttatactgttgattttgcggctattctgcccgaatatgtccttgttggtttctccggtgccacagg |
417 |
Q |
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| T |
13333993 |
taaatggtcctgtcatagaggaaactgctgtatcttatactgttgattttgcggctattctgcccgaatatgtcctggttggtttctccggtgccacagg |
13334092 |
T |
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| Q |
418 |
t |
418 |
Q |
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| T |
13334093 |
t |
13334093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 329
Target Start/End: Original strand, 13308539 - 13308836
Alignment:
| Q |
20 |
ttagattatgagttcccagagaaatcatccgatggtggattccttggacttttcgataaagaatccgccttcaatacctcgcaaaacttgattgttgcgg |
119 |
Q |
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| T |
13308539 |
ttagattatgattttcccgaaaaatcatcggatggtggattccttggactttttgataaagaaactgccttcaatacctccaaaaactcaatcgttgccg |
13308638 |
T |
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| Q |
120 |
ttgagtttgatagttttagaaatgaatgggatcctcaaatcgcaggtaactcacctcatataggaatcgacatcaacacgattaggtcttcagctactgc |
219 |
Q |
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| T |
13308639 |
tcgagtttgatagttttgcaaatgaatgggaccc------------taactcacctcatataggaattgacatcaacacgattgagtcttcgatcagtgt |
13308726 |
T |
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| Q |
220 |
tctatggccaatcgatcgtgtaccagaaggatcgataggaaaggcacacataagttataatcctgcctcgaaaaaattgactgcgctggtaacttatcta |
319 |
Q |
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| T |
13308727 |
tccatggccaatcgatcgtcaacctcaaggaacgataggaaaggctcgcataagttataatactgcctcaaaagacttgagtgtatttgtaacttatcca |
13308826 |
T |
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